Protein Info for Echvi_2816 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycine/D-amino acid oxidases (deaminating)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details PF01266: DAO" amino acids 14 to 371 (358 residues), 136.9 bits, see alignment E=1.3e-43 PF13450: NAD_binding_8" amino acids 18 to 55 (38 residues), 22.4 bits, see alignment 1.2e-08

Best Hits

Predicted SEED Role

"Oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G2J9 at UniProt or InterPro

Protein Sequence (374 amino acids)

>Echvi_2816 Glycine/D-amino acid oxidases (deaminating) (Echinicola vietnamensis KMM 6221, DSM 17526)
MLSYWEKKNLIQYDLILVGAGFVGLSTAIHYKEKHPGRSVLVLERGVFPSGASTRNAGFA
CFGSLSEIAEDLENYQEDEAFELVTKRRMGIKNIRSVFGDEAIDYSSCGGFDLIRKQEAH
YMEKVEGINALLSSVFGGDVFEEVADPKVFGFSDEVLHVVRNRFEGQLDPAKYIQCLWKR
CRELNIQMLTGAEVIRLDEENCRAHVRSYYDEEIVFQSRLMGLCSNAFIGQLLPEVNDYI
RPGRGMIMVSEPIKDLRLQGTFHMERGYVYFRNVDGRLLLGGGRNVSEEDETTTERGINE
DIKAYLQQLTKDVISPENPVSWEMEWSGTMAFGQSKKPILRQINPRVAVGVRLGGMGVAL
GWETGKELASLLGD