Protein Info for Echvi_2793 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 928 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR04131: gliding motility-associated C-terminal domain" amino acids 823 to 926 (104 residues), 43.7 bits, see alignment E=1.2e-15 PF13585: CHU_C" amino acids 823 to 926 (104 residues), 66.1 bits, see alignment E=2.5e-22 PF13860: FlgD_ig" amino acids 850 to 905 (56 residues), 29.5 bits, see alignment 6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0H8 at UniProt or InterPro

Protein Sequence (928 amino acids)

>Echvi_2793 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKCKAFLLLSTILFLFGFHQAMATHIRAGEIIAERISTQSLTYRITVVGYTDTRSSVVFG
PGEIHFGDGRVVENLNTESEFSTVESLGNQIEKNVFVITHTYQGPGEYTIRFQEFNRNDL
TLNMDNSVDTPFYIETMITIDPFIGVNNSPVLTIPPVDNGQINTRYIHNPGAYDPDGDSI
AYRFEDVVPLQDFQRPVNNYRSPASGEFSFNREDGSPNPYISMDPLTGDLIWDAPGIAGQ
YNVAFHIEEWRKIDGEYRKIGYVVRDMQIIIENSDNQRPQLQIPDDLCVVAGENIEAIIQ
GSDPDGDDIKIEVFGDPIEITSSPASYSPEETFQSSPGIVNFDWQTVCNHVRSREYQVRI
RITDDPESGPALVDIRTWNIRVVGPPPVIQSVSQGVGRSANITWDPYSCTNSAESMQIWR
SVNSNPYTPDSCETGIREGYELIGTTDMQTFEFLDNNDGEGLAPGNTYCYRLVATFPQPR
GGESIVSEEFCLTVDVDVPIITNVSVEETNAENGEIFVKWTPPYDIDTQQFPGPYEYQLI
RSEGFSGTGNMETVVTTSDTLFTDTGLNTEGLVYNYQVVLFDGGQAIDTSSMASSVWLQP
TIINEAIELNWEFNVPWNNSIGQYTHEVYRNRTDPDASDADTFTLIAEVDVTANGFTFLD
DGSHNGIPLSRETEYCYYVVTKGAYNVDMLTYPLINNSQIICARPDDNRLPCPPVLTFDG
PVCEELLANEDCNFNAFYHDLSWEPDFSGDCDDELGSFNIYFSPTGDEGTFELVSTESSL
SRDATLSDLEDYKGCYYITAVDRSGNESEPSNIVCVDNCPNYELPNAFTPNGDGTNDTFM
AFDNPFPRCPRFVEAVEIKIYNRWGGLVFEYNSATSNENDIYIRWDGRDQNGNELPAGTY
FYSATVLYDTNDESAGQEELKGHIQIIK