Protein Info for Echvi_2762 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 signal peptide" amino acids 1 to 46 (46 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 48 to 1059 (1012 residues), 809.7 bits, see alignment E=5.1e-247 PF13715: CarbopepD_reg_2" amino acids 49 to 131 (83 residues), 65.2 bits, see alignment 6.7e-22 PF13620: CarboxypepD_reg" amino acids 49 to 116 (68 residues), 37.1 bits, see alignment 5.3e-13 PF07715: Plug" amino acids 139 to 240 (102 residues), 69.1 bits, see alignment E=6.6e-23 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 217 to 246 (30 residues), 59.2 bits, see alignment (E = 2.6e-20)

Best Hits

KEGG orthology group: None (inferred from 56% identity to cpi:Cpin_0356)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0E8 at UniProt or InterPro

Protein Sequence (1059 amino acids)

>Echvi_2762 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MHLFGKWSINLNPKSINYMKEKLLRNSSLIVILLCGLVFSAAAQSRQVVEGTVKEKDSGQ
PIPGVSILEKGTTNGTVTGIDGEFRLEVTGDNPVLRVSFIGYKTLETEVGNKSDFDLHLE
SELGDLEEVVVVGYGQQKKESITGSVANVTSRDIEQVPTATVGGALAGKLPGLSFRQPDG
RPGAGAQLRIRNLGNPLYVIDGIQKDEGQFNNLAPGDIESITILKDASAAVYGSRAANGV
VVVTTKRGSRGEAPQISINGYYGIQNWSRFPEGVNGYEWMLGRADADMNQFGSTNITREE
LDKWQAGTEYGYRSFDWRDFIIQGNAPQSNISASVSGGSEKTNYYLAITRFDQKSVFSDE
FEFNRTNLQSNITTDVTDRLTIGLQLNGRLENRENPGVPGGDDYWQPRFALFRNRPTERP
YANDNPDYPANINNIETNWALLNYDRTGFFTNYWKNLQTNFTAEYDLPIEGLKAKGLYSY
YFADNYVNTFEYTYDVFDYIPEDDEYVRTGGNDNPYRDRNQRKIEETVTQFQLNYDRVFA
ENHKVGILALYERIQRRDYRNFIHSVPTNNYLSLVQFADMDQYDDYDYEEARIGYVGRIN
YEYKGKYLLEVSGRYDASWKFSPDMRWGFFPSVSAGWRLSDEVFMDNISAKTNLDELKLR
VSYGELGDDDIDIGPFDYIRGYNYGVSTVILDGENVQGSRNTGQPIDNLSWYTSKMFDVG
LDFSFGAGKITGTIDYFHRKRDGLRDIKDDVFLPLELGYGLTDENLSSDATLGGDVGINY
NGKVQDLTFRIGGTFGYARGKFLNSYNPAFSSSWNHYRNSGENRWYGIFWGYETIGQFQS
QEEIDTYPVNIDGQGNGTLLPGDLIYKDVNQDGKIDGYDERPIGYSLDGTPSISYGLNMY
FNYRNFDLTMDFSGGSLASYNQNWEMRWPYQNGGNLLAYMYDDRWHREDPYNLDSEWIPG
ENPPLRYNAGGHSNYNRNSTWWLTNVKYIRMRTASIGYTLPPKVLSKLKIERARVYFTTY
NLFSIDNVHQFGIDPEVRDENGLQYPQNVNMNLGFNLTF