Protein Info for Echvi_2725 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Domain of unknown function (DUF1735).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF16343: DUF4973" amino acids 24 to 152 (129 residues), 204.4 bits, see alignment E=8e-65 PF08522: DUF1735" amino acids 30 to 152 (123 residues), 65.6 bits, see alignment E=1e-21 PF14274: DUF4361" amino acids 165 to 308 (144 residues), 112.5 bits, see alignment E=2.9e-36

Best Hits

KEGG orthology group: None (inferred from 80% identity to zpr:ZPR_0221)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G284 at UniProt or InterPro

Protein Sequence (327 amino acids)

>Echvi_2725 Domain of unknown function (DUF1735). (Echinicola vietnamensis KMM 6221, DSM 17526)
MNKSNISFCLISLLMLFGACNDEWTEEQFDNFVSFKAPVSSEGVSDIYIRYREDEKTTFQ
QPLIVSGSRTNVVDRTVHVEVDSDTLEVLNYEHFQNREDFYYRELDSKYYEIPSTVDIKA
GENTALMTIDFSLKDIDMVDKWVLPLTIKDDPSYNYVANPRKHYRKALLRIHPFNDYSGT
YSGTALKTTMEGYEDETPIVKEEIRAYVVDENTVFFYAGNIDEDRQDRRNYKIYADFDQN
GAVTFYADNPDMKFQVNKDASYTINEQMDDIRPYLLHRYLTINNIDYQFSDYTMVPNVDI
NYKVSGSLILERQLNTQIPDEDQAIEW