Protein Info for Echvi_2666 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 819 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF14498: Glyco_hyd_65N_2" amino acids 32 to 267 (236 residues), 230.8 bits, see alignment E=2.5e-72 PF21307: Glyco_hydro_95_C" amino acids 698 to 758 (61 residues), 81 bits, see alignment 7.4e-27

Best Hits

KEGG orthology group: None (inferred from 54% identity to bth:BT_1010)

Predicted SEED Role

"putative large secreted protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1M8 at UniProt or InterPro

Protein Sequence (819 amino acids)

>Echvi_2666 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MEFWWKSLVWCMVSLYGSIICPGQVAGQELKLWYDDPAASWVEALPIGNGRLGAMVFGDP
YEEVIQLNENTLYAGRPHRNDNPDAKEALAEVQSMIFDGQYGAAQHRINETFFSGINGMP
YQTMGQLKLYFDDEREVKEYRRELDLKKALVTTHYKKGDTHFTTQVLASHPDQVMVIHLT
ADKPGAIHFTALVDRPGPFQLQHAANGELLMTGTSGDHEGIKGGVEFATRVRVKHSKGEM
VKTGEGIAVNNANSATIYISMATNFKQYDDISGNAVELSKQHLEKALGKSFDQIRKSHEE
DHRRYFDRVSLDLGESEAEKDPTDKRVENFSKRDDPGLAALYFQFGRYLLIAASRAGGQP
ANLQGIWNDQLNPAWDSKYTVNINTEMNYWPSEITHLSEMNEPLVEMVRELSQTGRKTAK
DMYGARGWAMHHNTDLWRITGPVDGAFWGMWPMGGAWLTQHLLDKFDFSGDTTYLKSIYP
ILKEACLFYLDILKVAPETGWKVVVPSISPENAPYLDHDASVGAGHTMDNQLLSDLFQRT
SRAASILDDKAFAEQLKDSWALLAPMQIGRWGQLQEWMYDWDNPEDHHRHVSHLYGLYPS
NQISPYHTPKLFQAAKTSLMARGDESTGWSMGWKVNLWARLLDGNHALKLIKDQLSPSIQ
ADGKQKGGTYPNLFDAHPPFQIDGNFGCAAGIAEMLVQSHDGAIHLLPALPDAWETGKVS
GLRTRGGFEVEMAWKNGKPQKVTISSTLGGYCRIRSYYPLSGEGLQPATGEISNPFFQTP
EVKPALVASASTLLPLVLDEIYEYDLSTKPGKKYELHAK