Protein Info for Echvi_2664 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Beta-xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 31 to 297 (267 residues), 136.1 bits, see alignment E=1.6e-43 PF17851: GH43_C2" amino acids 324 to 518 (195 residues), 135.7 bits, see alignment E=1.9e-43

Best Hits

KEGG orthology group: None (inferred from 69% identity to psn:Pedsa_2568)

Predicted SEED Role

"glycoside hydrolase, family 43"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYA7 at UniProt or InterPro

Protein Sequence (523 amino acids)

>Echvi_2664 Beta-xylosidase (Echinicola vietnamensis KMM 6221, DSM 17526)
MRKINSLLPVITLVMAFLMSHTAMAQAQAAKNPIIHADVPDMSMVRVGDTYYMSSTTMHM
SPGVPIMKSKDLVNWELINYAYDRLGEVDAINMENGKNAYGAGSWASCLRYHEGMYYVST
FSSTTGKTYIFTTDDLENGPWESHSFSPSYHDHTLFFDDGKIYLIWGGGKLSMVEVKEDL
SGVKPGTERVLIENATAPSGPDVMLPAEGSQLFKVDGNYYLFNISWPQGGMRTVIVHRAD
QINGPYEGRVMLQDKGVAQGGLIDTPDGTWYAYLFRDYGAVGRIPYLVPVQWQDGWPVLG
AAGKVPDQLDLPANKSLIPGIVASDDFDRKKKDRDLPLVWQWNHNPDPEHWSVRKRKGFL
RLTTARVDKTLVDAKNTLTQRTIGPYCEGIIKMDVSDMKDGDFAGLALLQKLYGQVGVKA
VNGEKVLVMVNADAGEPEEIERIPFHANTVYLKATGDFTERKDEANFYYSLDGKDWKPIG
STLHMKYTLPHFMGYRFGLFNYATKSPGGHVDFDFFHITDTRR