Protein Info for Echvi_2588 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF14322: SusD-like_3" amino acids 25 to 210 (186 residues), 60.2 bits, see alignment E=5e-20 PF12771: SusD-like_2" amino acids 89 to 192 (104 residues), 33.8 bits, see alignment E=2.9e-12 PF07980: SusD_RagB" amino acids 273 to 584 (312 residues), 158.9 bits, see alignment E=3.5e-50

Best Hits

KEGG orthology group: None (inferred from 50% identity to shg:Sph21_0432)

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G1U6 at UniProt or InterPro

Protein Sequence (585 amino acids)

>Echvi_2588 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MIMKKIFHIIIALIALVPILVSCEDFLETEPVDKLVPNTFFQSEKDLELYSNSFYQRQVP
GGLAVVQSDEMGEFTSKNQSNNFIAGAYSSVDEGAWNWSDLRNINYFLENFDNEVIPQEA
RDHYEGIARFFRAYFYFDMVKRYGDVPWYSKTLSTEDPDLYKPRDPREMVIDSMLQDLDF
ATSHIRDSKDNGSSLVTRQVAYAFMSRVCLFEGTYRKYHEELGLQGTVGELLQKAADAAK
SVMDAQQYQIYSTGSPATDYRDLFTNENPVSEEVMWAVVYNNALKRWHNITWKFNSATYG
NRWGLNKQFVNTYLMTDGSRFTERQGYDTIQFVREMENRDFRLAQTVRSLGYTRLDGTPA
PPNFGYTYTGYHILKFSLDDSRLDGISESYNSIPLIRYAEVLLNYAEAKAELGEFDASIW
EQTIAPLRERAGVDSSIPATADSYLQTVYFPSISDKFLLEIRRERGIELCYEGFRYDDLL
RWKKGDLVEMPWEGIYVPGLNQPMDLDGNGKPDVAFVETVPESKVAGVIYFVIDGTNSIL
TEGDKGHIVWRANEDRQFPDKKYLHPISNTDLVLNPDLGQNPGWE