Protein Info for Echvi_2484 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 989 signal peptide" amino acids 1 to 58 (58 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 62 to 137 (76 residues), 53.3 bits, see alignment 7.5e-18 PF13715: CarbopepD_reg_2" amino acids 63 to 148 (86 residues), 68.5 bits, see alignment E=1e-22 TIGR01782: TonB-dependent receptor" amino acids 153 to 976 (824 residues), 455.3 bits, see alignment E=2.4e-140 PF07715: Plug" amino acids 165 to 268 (104 residues), 46.9 bits, see alignment E=8.6e-16 PF00593: TonB_dep_Rec" amino acids 478 to 954 (477 residues), 129.5 bits, see alignment E=8.2e-41 PF14905: OMP_b-brl_3" amino acids 636 to 974 (339 residues), 89.8 bits, see alignment E=5.3e-29

Best Hits

KEGG orthology group: None (inferred from 50% identity to cpi:Cpin_4146)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G138 at UniProt or InterPro

Protein Sequence (989 amino acids)

>Echvi_2484 TonB-dependent receptor (Echinicola vietnamensis KMM 6221, DSM 17526)
MIYKYLHYKLYLESTDKFTRTTSRTTYNRFVEKLIKHMKKHLPLILTLLIWATQVMAQNQ
ASLSGSVSDQTGYLPGVNVLVMETSQGSPTDLNGKFEIANLPAGKATLRISYLGFETVTK
EVELKAGSNSVGDIQLTEASGDLEEYVIQGTMVPSQLKAISIKKNSLAIMDVIAADAIGK
LPDRNAAEAVQRLPAASVNRYHGEANQVSVRGTPYAWSSTLYNGTRLPSSNFNGNRNALL
DAIPAEMIQYVQLSKAITPDMEGDAIGGSINFVTRSAPQDRMLNVSAAGGYNQKSQNGSY
NASIVYGDRFFNDKFGVILAASIWNRNFSSDEIVLDYNLNSAVPSERYSINTMNAKRYYG
TRRTTALNAALEYEFNTDHKVFARIVQDQFDDIRPVYEAYYEFDANRYRYSNRESEYRTY
LKGYEFGGVHHLATNFKMDWKLSSYESYYNLDTPPNMPSDLKGLPIAQFYQNLEGDFGGR
SADGRVYNVFDAPDGKGITPLNFDPELTNENDFMDPDRLTLQQLIIYQIDQRDRDHVAQM
NFTWDVNPKFSLKAGGKFRFKENEAQQTPAVFLPNARLGIPGSAPLRTLSEFQRMDFPAP
GTFFQELNGQFDGLAIRPMPQDQTFEIFSPEFMAENDINNYSPASNATTTYEGTEDVYAG
YIMGTYDLTDQVQVIGGFRNEFTKLTMNSFAYDDETDEVSPVSRDNDYNAFLPMFHVKYS
PKEQVNLRAAYTRTFSRPNFGSLSPSESIDTSTGIPRISRGNTELLPTFSNNFDLMGEWF
LEDIGMITAGVFYKDIDDFIFTDLSAETIEGTNYLVSQPKNLESAYLIGFEMGITKRFSK
LPAFWSGFGVDVNYSRIHSELEVPRLDDEGNITSTDITTLPTQSSNLFNTAVFYEKSGLM
LRLAGNFRGASVETINQNLGPDYYVHVDNNFTVDFSAAYSITDKIKAFAEIRNLTNEPYV
QYLGDNKDRITSSEWYSTNGQAGIRFIIF