Protein Info for Echvi_2445 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 956 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details PF00989: PAS" amino acids 326 to 432 (107 residues), 25.8 bits, see alignment E=3.2e-09 TIGR00229: PAS domain S-box protein" amino acids 327 to 442 (116 residues), 45.9 bits, see alignment E=2.9e-16 PF13426: PAS_9" amino acids 333 to 434 (102 residues), 28.6 bits, see alignment E=5e-10 PF08447: PAS_3" amino acids 345 to 428 (84 residues), 32.2 bits, see alignment E=3.7e-11 PF08448: PAS_4" amino acids 453 to 556 (104 residues), 39.3 bits, see alignment E=2.3e-13 PF00512: HisKA" amino acids 575 to 640 (66 residues), 68 bits, see alignment 2.1e-22 PF02518: HATPase_c" amino acids 688 to 800 (113 residues), 93.2 bits, see alignment E=4.9e-30 PF00072: Response_reg" amino acids 837 to 948 (112 residues), 92.9 bits, see alignment E=5e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZG3 at UniProt or InterPro

Protein Sequence (956 amino acids)

>Echvi_2445 PAS domain S-box (Echinicola vietnamensis KMM 6221, DSM 17526)
MFMRNRDNFKRFHVLTLMSVASIILIFSLGYLFYNTLSKNLLGSSRQFLAKQVEIASNEV
QRRFNTLYEDLTYYTTRWEGYDEVSGAEKIQSSRTRQLLNSYGDLVDTLFVKRGEEIWAF
NLKDNNYFEQIKIDQPKSFNDPKRFIKVQSHLDPITVIASVNLDGFLGHYTSNHYLGDGG
YKFYLYGENAYPLGENERTVELSLSPALWKEMQNEYLGGLRGVYEGDILKYQQDGTAARL
KAIVAQYPFNLFPLEGKFAIVFAQDQSIIISRLYNTYFLLFVGLFTLLILVIYLLIKHGI
SIDERHIALEKQSQQINRLFEQQTMLLQETNGFVYYHDASGKVSNVSENVTNVLGFTKEE
FLENNKSQVVEKDLQKLQEKAKKALDEKWDYLSFEVSFLKKDGAIIRTKNFERLFYDQEG
KFVSSVGICTDITEKYLAERELIKSENRLRSVLNSLPDIIFIYDNQGVYLDYYVQESDML
ISPPELSLGKHIRDIIPPPYGEKMESALLRAAKTGKVQTEQMTLDLPSGKKFLEIRFFKL
DEERMISVGRDVTEQKLWEKGLKEAKEVAEGANRAKSEFLASMSHEIRTPMNGLLGMIGL
LEHTKMDDEQQSIVKVIKDSGESLLVIIKDILDYSKIEEGKLELELSSSKFREELNKVIN
IFSGMVVGKELSLNLDIAPTIPQWLILDNEKLSQILFNIIGNAVKFTPKGGDVSIKVSGE
PILDKNFMLYFNVKDTGVGIPKSKIDQLINPFTQTGRGTAEEKSGSGLGLAIANKLIELM
GGSLQIESEVGKGSEFSFTVFARISDSEEKVGKDDYEKYAKEEYKLSHISDKFPKEILLA
EDNDINLKFMKLLMKQLGYSVDTVSTGEEAVKAVQKKRYDMIFMDYQMPVMDGLEASREI
KKMKEGKYIRIIGLSANVFKEDIERAYEAGMDDYLTKPIKIQDVVMKIKESSGMSV