Protein Info for Echvi_2416 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: SusD family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14322: SusD-like_3" amino acids 22 to 211 (190 residues), 63.6 bits, see alignment E=3.1e-21 PF07980: SusD_RagB" amino acids 257 to 537 (281 residues), 124.3 bits, see alignment E=8.4e-40

Best Hits

Predicted SEED Role

"RagB/SusD domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G046 at UniProt or InterPro

Protein Sequence (538 amino acids)

>Echvi_2416 SusD family. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKINSIFAILLLLTASGCAEFLEEENKSNVTAEEFYETAEGYEALINANYSALRNIYGD
DPWMFVCGTDLYQEGRDRPPQGLSKYFELNSSSSGVDFLYVNCYKAIQLANSAIHYADIT
EQTGVTTQYLGEARFLRANAYFLLVQSYGGVGMITEYVDEPILQFDRSNAEEVYAFIIAE
LEGAMGQVSSGAYDGHVNQRAVENLLAKVHLTRGYEAFGTADDFAKAASYADNVINGQGL
NLTSEELWTPGNDMNEEVIFSVQWSAGSISADPTGMGNKQQSYFGPYMGGSEVAGDAPYK
TYTTLPNRFALDLYEEGDERWYSTFMTEVFTRYYDYFDVDDHSSLMVEDFYEPRWFTAQD
SIDYVNAHPGVEYHSYGTTDPNGGAISLDRATMIVKKFDDPTSLFGGASSTRDFIVSRLA
ETYLVAAEAYLQAGDPSTGLDRLNVVRERAGVADASLGEFDLDYILDERARELLGEYHRW
FDLKRTGKLVERASAHNSWITPSNFEGANGNLKILRPIPQNAIDLNQNKDFPQNPAYE