Protein Info for Echvi_2379 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein/protective antigen OMA87

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF01103: Omp85" amino acids 375 to 747 (373 residues), 101.6 bits, see alignment E=6.6e-33

Best Hits

KEGG orthology group: None (inferred from 50% identity to zpr:ZPR_2083)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZA8 at UniProt or InterPro

Protein Sequence (759 amino acids)

>Echvi_2379 Outer membrane protein/protective antigen OMA87 (Echinicola vietnamensis KMM 6221, DSM 17526)
MIFLLAALSSCGVGKYIPEGEQLYTGATLKITTEDKEHVNEKTLEVIQSRLHEMIRPEPN
SKFLGMRIGLWAHYKGTQEKPGFFNRFMNKKFGQEPVYFSQVNASKTEELLLNRLENNGF
FYASSSSETTGKGKFLGMAYQVDVSRPYLMEKLTLEGDSLPIQKQMNEILEDSELQPGTR
FELQAFKNERTRIDEALKLRGFYNFNADYLIFEADTNNYDERKFDLFLRLKAGVPKKAIV
PYTVNDIRVYPNYTVEEEVSSQDTTFVEDIAFIQDELTFRPDLLEKYILIKKGQIYSSEQ
SRFTSNRLSSIGNYRYVNLRYEEVDSVTLDEGGRLDADIYLSPLKKRSVRAELQGISKSN
NFIGPSILLTYRNRNLFKGGETLNISANFGYETQIAGGDRTGLSTYDIGLSGDLIFPRVI
FPSQIQDRFRYSVPKTKISLGVQSINRIGLYRLNNVSTSYGYYWNANRFVYHEINPISLS
VVSLSDVTSDFQEILDDNPFLAKSFEQQFIAGLNYTFNYNQLGDKFRKHKIFTGFSLDMA
GNLIGAFDGKGTIEEPNKIFGMEYAQYVRGDLDFRYHLKLSEDQVLATRLFGGVGVPYGN
SISLPYVKQYSAGGPNSVRAFRIRSLGPGSYRPDSINNQSYFEQTGDIRLEGNIEYRFPI
VPYLKGALFVDAGNVWLMNENEALPGGKFSGKWASELGVGTGVGLRIDIEFFVIRFDFAS
PLRKPWLPEGERWQNEFKPFDRDWRRENFIFNFAIGYPF