Protein Info for Echvi_2337 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transposase DDE domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 42 to 59 (18 residues), see Phobius details amino acids 261 to 279 (19 residues), see Phobius details PF13612: DDE_Tnp_1_3" amino acids 107 to 261 (155 residues), 242.3 bits, see alignment E=2.1e-76 PF01609: DDE_Tnp_1" amino acids 110 to 277 (168 residues), 81.7 bits, see alignment E=6.2e-27

Best Hits

KEGG orthology group: None (inferred from 53% identity to pdn:HMPREF9137_0373)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>Echvi_2337 Transposase DDE domain. (Echinicola vietnamensis KMM 6221, DSM 17526)
MTLTDSKITEIFYLIDEFCIQFEKSTEKHILGNRPKRRPRMSLSEVITIMVMFHTGGFRN
MKHFYLYFIKVHKKHLFPQTVSYNRFVELMQSATLPMTIFLKTCCLGEGTGIAFIDSTPI
RVCKNKRIKRNKVFKDIAQVGKSTMGYFFGFKLHLVINDKGELLNFVVTQANVDDREPLR
NKSFVNNLKGKLYADKGYVSKDLTELLFSDGLHLIANIRNNMKNVLMEMKDKIMLRKRSV
IETVNDELKNMCQIEHSRHRSFGNFITNMISGLIAYSFFPKKPAIKYQTVQTNQIALF