Protein Info for Echvi_2301 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: amino acid adenylation domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2214 PF00501: AMP-binding" amino acids 9 to 358 (350 residues), 231.4 bits, see alignment E=7.3e-72 TIGR01733: amino acid adenylation domain" amino acids 28 to 434 (407 residues), 382.4 bits, see alignment E=1.2e-118 PF13193: AMP-binding_C" amino acids 418 to 493 (76 residues), 46.2 bits, see alignment (E = 3.3e-15) PF00550: PP-binding" amino acids 523 to 586 (64 residues), 48.3 bits, see alignment (E = 4.3e-16) amino acids 1523 to 1581 (59 residues), 39.4 bits, see alignment (E = 2.7e-13) PF00109: ketoacyl-synt" amino acids 606 to 853 (248 residues), 226.2 bits, see alignment E=2.3e-70 PF02801: Ketoacyl-synt_C" amino acids 863 to 980 (118 residues), 137.5 bits, see alignment 9.9e-44 PF16197: KAsynt_C_assoc" amino acids 984 to 1095 (112 residues), 63.2 bits, see alignment 1.4e-20 PF22621: CurL-like_PKS_C" amino acids 1045 to 1108 (64 residues), 44.6 bits, see alignment (E = 5.3e-15) PF00698: Acyl_transf_1" amino acids 1129 to 1447 (319 residues), 180.1 bits, see alignment E=3.6e-56 PF00202: Aminotran_3" amino acids 1760 to 2119 (360 residues), 186.2 bits, see alignment E=3.7e-58

Best Hits

Predicted SEED Role

"Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)" in subsystem Fatty Acid Biosynthesis FASII or mycolic acid synthesis (EC 2.3.1.39)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.39

Use Curated BLAST to search for 2.3.1.39

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXE3 at UniProt or InterPro

Protein Sequence (2214 amino acids)

>Echvi_2301 amino acid adenylation domain (Echinicola vietnamensis KMM 6221, DSM 17526)
MTIVDLFKEQAIIASSKPAISYGGDQISYQRLEDNSNQLAHLMIEKGVSPQDTVGLCVHR
STEMMVAILAILKCGAAYVPIAPEFPEERKKFICEAAEVKLMITDQGDLLETLAGIPLLD
IRENISSAYPILSPSVNFSTDNTAYILFTSGSTGEPKGVCMPHKALVNLLLWQKKQFNKH
VGVNTLQFSKFTFDVSFQEIFSTLTTGGILHLLDEETVKDPFALLQLMEEKQINRLFLPF
VSLQSLAHTAVAHQLYPKTLEAVITAGEQLKITEQITAFFSQLDRATLYNQYGPTEAHVV
SQLTLNPENTSSWPALPSIGYAIDNTELYVLDQNEQPVPQGSEGELYITGDCLASGYLKQ
PALTQEKFKFLDSIKGKPSLRAYKTGDIAKISAAGEVIFLGRRDDQVKIRGHRIELGEVE
AVLGKYPAIYQVAVQAKMYEDGQKYLVAYYIPAPNQQPTQKQLIEHLAQSLPEYMIPAIF
FQMEAFPKTSSGKIDRKSLPDPINKREKIEAPIVPAKTTLEKKLAKYFQQVLHFDRIGIS
DNFFEFGGNSLLAQKLSNDIRLALGLTVPVTSIYQHPTIQALTAHLSQDGSTAPGTNVAT
RTPAQKAVAIVGMTGRFPGADDIDTFWKNLVEGKETVTTFEEAALDPWIAEAVKKDENYV
KARGILKDADKFDPNFFGITPHQAALMDPQQRLFLELAWELLEKTSPLHPTPSYKTGVFA
GTNNNTYYQKNLLSNPDLIEQNGALQVMTLNEKDYIATRTAYQFDLKGPAISVYSACSTS
LLAIAQAVQSIRTGQCQMAIAGGSTITSPINSGHLYQEGAIFSKDSHCKPFDASASGTLF
SDGAAAIMLKDLDMAIQDGDRIYATIKGIGINNDGNAKGSFSAPSIQGQADVIKAALEDG
ELHPSSISYVEAHGTATPLGDPIEIEGLKLAFGKHEKHRFCGIGSVKSNFGHLTAAAGVT
GLIKTVLSIYHQKIPATVGFRELNPQIDLKDTPFYINGATTAWQAEFPRRAGVSSFGIGG
TNVHVILEEYPQVQETSDAPTSPYHLLCFSAKTANSLELYKDKLLQLVRSNPTMNLADLC
YSINLKPHQFIHRAYLTFKDSADLLSQLVRKNNTTTRQKTVKQLPQNTVFVFPGQGAQYL
NMGKDLFESAPAFREALTQCANLFDKLLDRPLLDIICPAAETAEAEALLKNTRYTQPAIF
AIEYALAKLWMAWGISPSAMVGHSIGEFVAAHLAGVFSLEDVTRLVAKRGQLVAALPGGD
MLSVRAPHSKIEHLIEGDISLAAINSPNLCVLAGPSEAIAHISSLLDQENILHKKLFTSH
AFHSSMMDPVLDDFGKEVAKTNMSAPSIPIVSTVTTKPLTDQEATSVPYWTAHLRKAVCF
SPAMEHLLEEDPNTIFVEIGPGNVLSTLIKQHQQARNAVTVHSTNRQSDKNHYQELLGNL
GEITLSGGKPDWHRFYAGQKRIRLEEVPTYAFDRKRCWIDPPVKAPISQQPAQNTPIING
KKTTTPMRTEVLRKKAVDVLERLSGLDIDHQPGDSSFLELGLDSLLLTQLSFALKKEFGV
PLSFRQLNSQVNTVNALVNFLDEALPADQFQPAAEPSPIPSPTTPLAENENRQAVPSHTT
YPSANHHSAIGLIGQQLELLSKQLALLQGSAVPAAAVSQQEPNTHLNGHAPAAPPSPAKK
PAVTLSKEDAENLKKPFGATARIDKNGQSLPEKQQNFIEAFTKKYTSKTASSKAYTQQNR
SHMADPRVVSGFNPSIKETVYSLVVNRSKGSRIWDIDGNEYLDILNGFGSILFGHKPDFI
DEALKEQIEKGYEIGPQHELSGAVCKLICDITGHDRAALCNTGSEAVMGALRIARTITQR
SLVVAFNGSYHGIFDEVIVRGTKSLKSFPAAAGIMAESVENILILDYGTAETLRIIEERK
DEIAAVLVEPVQSRRPEFQPVDFLKKVREITAAVGSALIFDEVITGFRMHPQGAQGIFGI
KADLATYGKVVGGGLPIGVIAGKAEFMDALDGGHWQYGDASVPEIDVTYFAGTFVRHPLA
LATAKASLEYIQQDDGQLQQNLAAKVQRLADGLNGFFEEHNIPAYVANFGSLWKIKFKQE
LPYTELLFATFREQGLHIYDGFPCFATGAYQDEDTDLILTVIKSGFQQLASATFWDALVP
GLSEGFQASPDVLSKDQPPVPGAKLGKTPEGKAAWFVPDPERPGKYLELAFKTA