Protein Info for Echvi_2296 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 237 to 255 (19 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 353 to 373 (21 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 316 (304 residues), 83.4 bits, see alignment E=7.4e-28 amino acids 234 to 371 (138 residues), 40.7 bits, see alignment E=7.6e-15

Best Hits

KEGG orthology group: None (inferred from 48% identity to dfe:Dfer_1165)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXD8 at UniProt or InterPro

Protein Sequence (393 amino acids)

>Echvi_2296 Arabinose efflux permease (Echinicola vietnamensis KMM 6221, DSM 17526)
MKLLRKRRIALSGLFFLAGLSFASWASRIPDFQQLFDLSEGQLGTLLLGMPLGSLIALPL
AGWAVDKYGSRKVIVTGSLLYAVSLLSLGFTSSAVQLGVAVVIFGMMGNIMNISLNTQAL
LVEDGYNRSILASFHGLWSLAGFAGAGIGALMIKLDWAPLQHYWVVAGIMLLILVSSFNL
LFKEEKRAGSGGLTLKKPDALLLRIGLVGFFGMMCEGCMFDWSGVYLKKVVVASPDLVPL
GYVTFMAAMASGRFFSDTLANRWSKIVMLRISGALICLGLLIAVVYPSFWTAVAGFLLVG
FGTASVIPLSYSIAGRSKMYSPSISLALVSTISFFGFLLGPPLIGFIAELFDLQVSFAVI
AMMGMCISLLVSIRTQIFDSYKVPANKKVAAQG