Protein Info for Echvi_2288 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted dehydrogenases and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01408: GFO_IDH_MocA" amino acids 36 to 159 (124 residues), 74.7 bits, see alignment E=1.1e-24 PF02894: GFO_IDH_MocA_C" amino acids 171 to 387 (217 residues), 49.9 bits, see alignment E=3.7e-17

Best Hits

KEGG orthology group: None (inferred from 57% identity to psn:Pedsa_0656)

Predicted SEED Role

"putative hydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0M8 at UniProt or InterPro

Protein Sequence (402 amino acids)

>Echvi_2288 Predicted dehydrogenases and related proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRRDFMKTGGVVLGGSLLPYQLANAFRTNTDKGPIKIGIIGCGDRGKGLMHVMSGMPEQ
FEIVAICDNMDFRLDQTRKAFPSLQAKSYKNYQDLVDHPDISAVAIATPLNMHFAPAKAA
LQAGKHVYLEKTMTYDIPEAMELIELVKKNPDLTLQVGHQYRYTPLYYKVKDMIQSGYMG
KITQIDSRWDRNWNWKRPVPEPSLERIINWRMYKEYSGGLPAELLSHQIDFINWAFETHP
DTIIGTGGIDNYHDGRETYDNVQLLLRYEKEGMIGNFGATCSNAREGYSFSIKGTQGTVE
LLMNEGYFYPEEERMEELQIVDGVSGATKLTWKEGKGIPILEEKTKDGTWYAFNDFYKSI
LNKEYPASNVISGATTATCIHLANHSLFHKTIEDWKPAYNYE