Protein Info for Echvi_2233 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: pyridoxal phosphate enzyme, YggS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 PF01168: Ala_racemase_N" amino acids 2 to 221 (220 residues), 81.2 bits, see alignment E=4.6e-27 TIGR00044: pyridoxal phosphate enzyme, YggS family" amino acids 15 to 221 (207 residues), 191 bits, see alignment E=1.2e-60

Best Hits

KEGG orthology group: K06997, (no description) (inferred from 64% identity to sli:Slin_1116)

Predicted SEED Role

"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZM2 at UniProt or InterPro

Protein Sequence (224 amino acids)

>Echvi_2233 pyridoxal phosphate enzyme, YggS family (Echinicola vietnamensis KMM 6221, DSM 17526)
MHIKENLSELKKQFKKQDCLLIAVSKTKPVSDIQEAYDAGIRHFGENKVQELTEKQPQLP
DDIRWHMIGHLQRNKVKYIAPFIHLIHGVDSFKLLKEINKQAQKADRVIACLLQVHIAKE
ESKFGFSEEEIMDLIKLPEFAALEHVRVIGLMGMATNTDKEAVIRAEFAALKKFMNHLNT
LDLPGGMALKELSMGMSGDYQIAQEEGSTMVRIGSAIFGQRNYL