Protein Info for Echvi_2225 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transposase DDE domain./Transposase domain (DUF772).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 55 to 72 (18 residues), see Phobius details amino acids 420 to 435 (16 residues), see Phobius details PF05598: DUF772" amino acids 24 to 113 (90 residues), 38.7 bits, see alignment E=6.2e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G0V6 at UniProt or InterPro

Protein Sequence (450 amino acids)

>Echvi_2225 Transposase DDE domain./Transposase domain (DUF772). (Echinicola vietnamensis KMM 6221, DSM 17526)
MKDTIQLPIFKDFDGYSPKYHFFKNSLLGQIHDSLPWEKLSSLVPEKLQGPGAPRWFGAR
GMFALMFLKAYLNTSDRQLIERFNTDWSLQYFCGKVLASDQQIRDLTIMTRIRAYIEEHC
HWEQIQEVLIDHWKQDVDNSHVLLMDATCYESYVRFPTDPKLLWECCQWVFEKQLFKKCK
QLGIKRPRSKYREQKAKQLGYFRKRRKSFKETLKRKKSLVFLLEKGLGQLQEILDFYQGA
GFRPNDFACLKTIKKVLVQQQFLLENPPSELKDRIVSLHKPYLRPIVRGKENKRVEFGMK
AHILQTGGLSFIDKLDFNNFNECTRLKISTVKHTRVFGQTSQLGADRIYATNANRKYCTS
KDIFTGFPKKGPRPHSKAEKILSAEVSKQRATAMEGAFGNHKNHYGLVKIRVKGDKREKL
AVLFGIMAANAVAVAKRRNQQESPPINKAA