Protein Info for Echvi_2166 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Heparinase II/III-like protein.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF07940: Hepar_II_III_C" amino acids 435 to 602 (168 residues), 33.9 bits, see alignment E=1.3e-12

Best Hits

Predicted SEED Role

"FIG00896938: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYP2 at UniProt or InterPro

Protein Sequence (650 amino acids)

>Echvi_2166 Heparinase II/III-like protein. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKCCVIFTTKGILGCCLFFCAVVSGMAQEKRDLLTQGISETIPLSDWDIDPLKAFPSEEA
VHDQLIQLPEEIRGQLIEEGNKALAYEWPVIPASAYLDFVRNGDRTRMQSYQNQRTSTLK
RLVLAELATQEGTYVDAIMDGAWAMCEQSTWVLSAHLSAQKDKSGLPDVEEPVIDLGAGE
VANLLSWIHFYFRNDFESISPLLARRIEKELDERIISPYLARDDFWWMGFRSSFVNNWNP
WCNYNVLLTTSLVAQDPEQLQQVVLKTARSVDQFINYYKADGACEEGPAYWDHAAGKMLE
YLELLKRLSNGKVDIGQHALIQHMGNYIRKVHISDDYYVNFADASARLKAHPGIIFRYGR
YISDEKLKGFAAGLAQKEPLSQWLVKGSLDREIHNLLLYKELESQKIYQDKAPFFWYPET
EVAGARTANGLFFAAKGGHNNESHNHNDVGSFVLFYRGEPVLIDVGVETYSAKTFSKDRY
DIWTMQSDFHNLPQINGVSQKNGNDFKALSVAFEEGKRNARFSLDISKAYPETADVDSWK
RSYELDRQEGTFVMEDQFSLRQWKVPSESHLMSLYPPTKSAAGEVVIALPSGQEILLHYP
ADKLVLTVEEWPMEDPRLQSVWEKEKVYRLVFVQLGELLKDKWTFQVHTP