Protein Info for Echvi_2165 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Polysaccharide lyase family 8, C-terminal beta-sandwich domain./Polysaccharide lyase family 8, super-sandwich domain./Polysaccharide lyase family 8, N terminal alpha-helical domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF08124: Lyase_8_N" amino acids 48 to 299 (252 residues), 162.4 bits, see alignment E=2.3e-51 PF02278: Lyase_8" amino acids 344 to 592 (249 residues), 294.7 bits, see alignment E=9.2e-92 PF02884: Lyase_8_C" amino acids 606 to 672 (67 residues), 59.7 bits, see alignment 4.6e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G076 at UniProt or InterPro

Protein Sequence (1158 amino acids)

>Echvi_2165 Polysaccharide lyase family 8, C-terminal beta-sandwich domain./Polysaccharide lyase family 8, super-sandwich domain./Polysaccharide lyase family 8, N terminal alpha-helical domain. (Echinicola vietnamensis KMM 6221, DSM 17526)
MRWKKLLVLVWLGLSIQVPLLAQNDFDIIMDRIFADFQRIPSTSSLDSQVASLRASMDVD
GSWPDIDYTDQSQTNWQPVKHYERVSVLAKAYSRQGSSYYGDASVLADITDAMNYWLGLT
PVPYSTNWWFLSIKVPKDIGNILIALRNAPVGIDQALENSMITWMTKGVSMTVSPGKDGS
NLTDIGQHYIMRACLTEDSALMQHAVTETGNSIKVSSGEGIKRDHSYMAHGAQLYIYGYG
REYVSGIRNIAVNITGTSYAYPPEKIAIFSDFVRKGFIKTSRGGFADFNAFGRSITRSGV
GRADVNLIEQVRNFDLPAYQASYDTVIARMRGQEAPDYGVTPEHRHYWQTDYTIHHRPGY
MVGLRTVSVRTVKSEMGNGENIKGHFLTDGATYIAVDGDEYFGIYPVWDWNKVPGTTTPA
WTSFPARSSWGTNPGKSSFVGGVSDGEYGASVYDMNDYSTRAKKAWFFFDDEVVCLGAGI
YSSSAEAINTTVNQTLLKGNVVADVGAGGVSLGAGEHAYQDDLKWVWHRDVGYVFPDGGH
LKLSTQSQTGTWNSINQTQSTAEVSEEVFKLWFEHGETPVDDGYAYVLLPGATTQETADF
DVQRFTILANADTVQAVGHPALDMVQVVLYEPGEYDLNGLQLNVNQPCVLILRDAGTAEV
KVTAADPSQGNAGKLRVGLKNESFSDMKMVDLEWPAGDLSGSSVGGTIDQQSPAFEELTL
PQTLEAVADAFVRDGSYADTNYPTGNLVVKKDGPGYSRESFLKFNSAILSNQLDSVKLRL
WVNNANTTVTDTNWEIYHVADDSWQETAITWNTKPVQDSLLGHIPGVPAGQYVTLDVTEA
VLESLSGDGVFSVTVKGTFQGSKTDAQFASREDANPAHRPVLVVYKTIAPGGESGSLPAI
ADTFVQKIDANGDAGNKNFGAAGFLAAQNGGYDREVYLKFSVSDLTSPVQEATLHLYSLG
AAGSSSWELYSLEDVSWEEGIGNWQGNSEEGLTWNTKPTGGTLLHSLQGTTQGGPVVIDI
TGYLQQVVTQQDTIAFRVTSSVPGVYTSFASRDGSDASRYPSIQYVLEPEPDTVLRKPAP
KNNVLLFPNPLEGMGTITSERIIRQVVIRKRSGEVLMEHNAVDGHTYELDLSGMKNGLYY
VLIIGDDYTEVRKAIKRN