Protein Info for Echvi_2146 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1002 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 52 to 1002 (951 residues), 775.3 bits, see alignment E=1.2e-236 PF13620: CarboxypepD_reg" amino acids 53 to 122 (70 residues), 42.3 bits, see alignment 1.6e-14 PF13715: CarbopepD_reg_2" amino acids 53 to 134 (82 residues), 70.8 bits, see alignment E=1.6e-23 PF07715: Plug" amino acids 143 to 248 (106 residues), 57.3 bits, see alignment E=4.3e-19 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 224 to 254 (31 residues), 63.1 bits, see alignment (E = 1.5e-21) PF00593: TonB_dep_Rec" amino acids 397 to 965 (569 residues), 37.2 bits, see alignment E=7e-13

Best Hits

KEGG orthology group: None (inferred from 52% identity to lby:Lbys_2271)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYM1 at UniProt or InterPro

Protein Sequence (1002 amino acids)

>Echvi_2146 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKLLTSIGWVALGSFSLALTAFPVSANPLKGEVLKIDSYEGSNVAEQAEIDIQGTVKDA
SGQALLGVSILVKGTTKGTITDMDGHFTLNDISEDAVLQVSFIGFKSQEVAIGGKSQLEI
VLEEDTQGLEEVVVTGYTTQKRENLTGSVAIVDGDKLQDITSPNVGNMLQGKLAGVDVSA
SSGAPGALPKIRIRGKNSIRSSVNPIWVVDGVIWHGTPNINPADIQSISVLKDAASAALY
GSRGANGVVVVTTKTAQGANTSNINVSAKTGVSLFNTGGFEISNSQEMYDLWGQFPNQNA
IPDYYNEALLNTDTDWLDIGTQAGTVQDYNLSYTGTADKTRIFATGNYYKEEGSVKGYNY
ERMTGRVNFEYDISPRFTIKPKLAATYINTENRQHSIYDMYRNLPWDNPYGEDGKPVNPQ
DGDVTWYGRDNSNYLYDLQWNYSTGDTVNVMANVDFQYDITENLSFISTNNITYYEAETF
SYTDPRSNSGLADNGRLYNGIGKRTTRFTNQMLSYNKAINDHTISALLAYEYNDYVYNSL
SATGKGIVPGASIIGSTSEPTTIGGTKNDYAFQSYLFNANYGYKGKYNAQVSFRRDGASR
FGANKKYGNFFAISGSWNIHREAFFNSQAFDYLRLKASYGGVGNTPASLYPQYELYSLNA
QYNGDPAAVASTLGNDDLTWEKTYDTNLGVEFGLWNRLTGVLEVYNKSTSGLLHFVPLPD
VSGYTGYFDNIGGVRNRGIEFTLGADVLNTASGFNWRLDFNIGKNDNEITELYGGKSQIS
GNTIIEEGENIDTWYMRKWAGVNPEDGTPQWEQVDPSTGEASVTGSYSAATLQKVGTSTP
DFFGGLSSSMEFKGVYLNATFAYSDGAMVYQSARELFDSDGAYPTYNFMRLQDGWSRWSP
DNTNATHPQPVYGGNNNAHKTSSRYLEDASYLRMRNVTLGYTIPAHITEAWKIGSLSAYF
SADNLITITDYSGLDPEAAVNGDTSSPYPLPKRLTFGVNLSF