Protein Info for Echvi_2132 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF20142: Scaffold" amino acids 57 to 201 (145 residues), 94.8 bits, see alignment E=1.2e-30 PF01471: PG_binding_1" amino acids 233 to 288 (56 residues), 37.5 bits, see alignment 3.2e-13 PF03734: YkuD" amino acids 317 to 487 (171 residues), 86.7 bits, see alignment E=3.7e-28

Best Hits

Predicted SEED Role

"L,D-transpeptidase YcbB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZA6 at UniProt or InterPro

Protein Sequence (550 amino acids)

>Echvi_2132 Uncharacterized protein conserved in bacteria (Echinicola vietnamensis KMM 6221, DSM 17526)
MKICVFLGWFLWFGGSVFSQSIGSIDPVSLEIRNILESSTPESSVSVGEEKLQQYHELIE
FYTNRAFAPVWPDGRHGHRAVKDLLEQIEDSKYDGLTPSSYHLYIVKEIITSFDAGKDIQ
NPVHRAYIDLVLSDAFLSLAHDLYLGKVSQEGLQNSWEIVPKRMKRSFSTLLEEAISSGK
LKERLVSLWPRYQVYRSMRKNMKQYFSMAETMEEPWDKMRGKTIKVNEENKLIPEVRERL
QYWGDLDREEGSEGNHYDSALFEGVKRFQKRNGLDADGVIGKDTYTALNEDPASLIQKVA
VNMERLRWLPDTVLEGRFVMVNIANFQLDYLQDNGLDTVFTSRVIVGREYHTTPVFNGEM
AYIVLSPTWTVPSSIIRREMIPKIKKDVSYLSRNHLKILTYAGKEVSPSSIDWSKASGGN
FPYMIRQSSGAFNSLGQAKFIFPNKHNVYIHDTPTKSLFSRDVRAFSHGCIRIQKPAEFA
AVLLEDDPKWDMERIREGMNSGQEKTVMLKKKVPVVLIYLTFWADPAGKAYLRKDIYERD
EALIRALMLD