Protein Info for Echvi_2071 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: outer membrane assembly lipoprotein YfiO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03302: outer membrane assembly lipoprotein YfiO" amino acids 6 to 220 (215 residues), 105.6 bits, see alignment E=1.4e-34 PF13525: YfiO" amino acids 33 to 177 (145 residues), 48.9 bits, see alignment E=7.6e-17 amino acids 146 to 282 (137 residues), 37.5 bits, see alignment E=2.3e-13 PF13174: TPR_6" amino acids 107 to 147 (41 residues), 14.1 bits, see alignment 6.1e-06

Best Hits

KEGG orthology group: K05807, putative lipoprotein (inferred from 42% identity to mtt:Ftrac_0970)

Predicted SEED Role

"lipoprotein protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ40 at UniProt or InterPro

Protein Sequence (316 amino acids)

>Echvi_2071 outer membrane assembly lipoprotein YfiO (Echinicola vietnamensis KMM 6221, DSM 17526)
MKNTIRHILLLAMVLTLGACGKFYKLEKSTNWDEVYTAANEYYEEGEYNKAIILYDKVLP
VIRGSEKSELAQFNYAYAHFRLKRYIEAASYFNTFYESFSRSPLAEEALFMHAYSLYLDA
PDYNLDQKSSREAVAAIQQFINRFPQSDSYERAMGMIDNLQSRFEKKAYEEASMYYRLTE
GLFPGQFYLACIVNFQNFVKSYPNSEHNEELAFKLVEVSSAYAERSVFNKKEERLNQALE
FGDEFQRKYPKSEYQNEVATLIAETKEELTSHQKMKKQYDELRKLEQEAREAQEKEAEEN
KELEQAVTPETGANSN