Protein Info for Echvi_2038 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Beta-glucosidase-related glycosidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 983 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00933: Glyco_hydro_3" amino acids 53 to 367 (315 residues), 266.4 bits, see alignment E=6.6e-83 PF00144: Beta-lactamase" amino acids 603 to 965 (363 residues), 157.9 bits, see alignment E=5.9e-50

Best Hits

KEGG orthology group: None (inferred from 49% identity to dfe:Dfer_2708)

Predicted SEED Role

"Beta-hexosaminidase (EC 3.2.1.52)" in subsystem Chitin and N-acetylglucosamine utilization or N-Acetyl-Galactosamine and Galactosamine Utilization (EC 3.2.1.52)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.52

Use Curated BLAST to search for 3.2.1.52

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G090 at UniProt or InterPro

Protein Sequence (983 amino acids)

>Echvi_2038 Beta-glucosidase-related glycosidases (Echinicola vietnamensis KMM 6221, DSM 17526)
MKYRLLKGGLWVLAMICVLQYTHAQSGSTTSKIPFLQQKSTWADSVFQTMSPEERIAQLI
MIPVYSNRDKAYEDSIARLVEEYKVGGLIFFQGGPGRQASMTNRYQAISKVPLIVSIDAE
WGLGMRLDSTMSFPYQMALGGIEDEQLIYQMGAEIARQCKRIGVNVNFAPVVDINNNANN
PVIGFRSFGEDKENVTSKALAYMNGMQDEHVLANAKHFPGHGDTDVDSHVGLPLISFSRE
RLENTELYPFRKLMRNGLGSVMVAHMSIPVLDDTPNLASTLSKPIVTDLLKGEIGYEGLV
FTDALNMQGVAKFYPPGIVDVKALLAGNDMLLNTMDVKTTIEEVKKAIKNGEITQAEVDK
RVMKVLQAKDWQGLSHWQPVSMEDIHEDLNNSKAHSLNRQLVEASITLLRNEEEALPIKR
LASEKLAYVALGAEEETAFQRGLSRYVEADTFFVPKDISLSSLEDMLKTLQGYSKVIVGI
HHLGLKASVKNFGITAEMNVMLKKLINAQPTVVAVFGNVYSLDKLEDLEKATAVIATYQE
SELTQDVASQLVFGGVGAKGKLPVTINHNFKIGDGLQTSDGFRFSYVEPEAVGIAQEDLT
GIKDLVQQAIAEKAIPGASVLVAKEGKVFYQQAFGYHTYDKEVPVKITDLYDLASVTKIS
TSLAALMQLQGEGKFDENKTLGDYLPMAKGTNKEDLVYKDILTHQAGLTSWIAFWKSTVR
KNGSFKWFTFKDHQSKRFPIKVADHLYIHRHYADKIYKEIMKSPVSEDKKYVYSDLSFIL
APKVVEHITGEPFIDYLNETIYDHLGASTLTFNPYQDYPADRIVPTEYDSLFRRQLLHGT
VHDEGAAMLGGVSGHAGLFGDANDLAKLMQLYLDDGEYADETLIKGHTVSKFGKCQFCPD
NYRALGFDRPRKPGDPNGNSAPSAPASSFGHTGFTGTYAWVDPENQLVYVFLSNRVNPTR
ENTKLYQLNTRTNVLEVVYQAMK