Protein Info for Echvi_2036 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted xylanase/chitin deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details signal peptide" amino acids 25 to 27 (3 residues), see Phobius details PF01522: Polysacc_deac_1" amino acids 45 to 178 (134 residues), 52.7 bits, see alignment E=2.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ08 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Echvi_2036 Predicted xylanase/chitin deacetylase (Echinicola vietnamensis KMM 6221, DSM 17526)
MEFSALSKYAAWGTVLILCWLMSFELAGRQRMEQTTSHGAVIRGDADQKQLALVFTGHQF
AEGARTILKTLDKTQVKVSFFFTGDFYRNEAFAQFIAQMKERGHYLGAHSDKHLLYCAWE
NRDSLLVSKAGFKKDLDRNYKAMEEYGIARQDAPFYLPPYEWYNDSISQWAAEMGLQLVN
FTPGTRSNADYTSPDMHHYVGSDAILKSILDHELLNGLNGFLLLMHVGVGPERADKFYDK
LSILISTLQERGYALVTVDELL