Protein Info for Echvi_2023 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1371 transmembrane" amino acids 152 to 174 (23 residues), see Phobius details amino acids 596 to 617 (22 residues), see Phobius details PF13191: AAA_16" amino acids 28 to 202 (175 residues), 55.7 bits, see alignment E=2.3e-18 PF01590: GAF" amino acids 993 to 1125 (133 residues), 32.3 bits, see alignment E=3.4e-11 PF07730: HisKA_3" amino acids 1175 to 1237 (63 residues), 43 bits, see alignment 1.3e-14 PF02518: HATPase_c" amino acids 1278 to 1367 (90 residues), 39.1 bits, see alignment 2.3e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZT6 at UniProt or InterPro

Protein Sequence (1371 amino acids)

>Echvi_2023 Predicted ATPase (Echinicola vietnamensis KMM 6221, DSM 17526)
MPYPSASSPSLITHHPELAKKLNEFIRLSSKANSSSLCGLIVTGPSGVGKTHLIEHYLNI
YKNEYLFIFISHLQQQRNIPYAGMKIGIGEFLRKVYKDLAPDQLEHFSAQLKKRLGEHFP
LLFDYIPELTLLLGKDTIPPTSPTPKVENQLYSLFHILFGFLSDFLGKSILIFIDNMQWM
DGSSVNLLHYLLLRLSPQQLRLIGASRESKENIIRVNQLMEWLNFETKNLEIIPLYGLRT
EQTLSFLEDILKAPVAPHLHRLFHALCEGNPSYMQVLAESLKAGKLIKLQNGIWSGDIPS
ITQQFKGKNAREILWDRLKTLSPPTLNLLTWLSCIGSYNHQVLVSLFENDKLLLQQSLQE
AVEMGLLSSLKGDYRFSETYIGEVIYDGIPLNEKTNLHYRIGKDILQNDLQALSSTERVL
AAQHLNQSLELVKEAGDAFICANLNLEVGKLQKQDNAYEQARHFLKISSDLFKTLPWEMV
KDLYWETNMERAKVEYHLGEYDLAEIHLDHLLERLLDLEKRAESYILKITINNHLGRYRK
VVTILGEALSELGLTLPTEDTDLEAALDQLKEGIAHPIEANSITGKSINQHFILKLLYVG
GMALHHTADTLMIWAALQIISRSRNTEDEGVKAIGYVSYGRMNIIAGNIDHGYQLGTKGL
QINQELQDMQYRCRVFGVFAFYIQPWKKSFDQSIPLLMEGMEAGRKAGDLIGLYILKTHL
FNLHLLSGHPIRPLLDYTFEESYPGMELTYYITHYQKSLIRYLSGERTFFSIPRQQPSWL
AAKLTIQEERFYRNHVWARYYFLFGHYEQALRSTREANANRKLQEGSPLVPANLVLLFLS
LTQNWHNLPSDKTGRHLDELKEILDACAHWHQHAPENYTATYCLLMAEWKRVNNRPSDEA
IEYYKKAIHHAKNDHYNLALANELLAKHLLEEAEKPAAIQHLRAAINAYQAWEGIAKVKQ
LHQQYQVLLDDGSIDLEPNIETVLRELSGDLELDPLSKKLMVLLMRISGTERTGLEWIEN
NGDIIDQKTLTLSPSRRDFAPVPSGLMLLCHRTQTPLIVNDLDKESSFSEITALKNSGVK
SFLIQPININGYLSMVIYLENRHTKDHFTEDLIRWIRIIANQGGMIIENARTHEKTLLLN
QEISREIEEKKQLISFIEQQKNNHLKDLIQTQEDERQRIAGDLHDSLGSLLSTIKIQLQG
LQSFTASPSKSNLDTLKKMDEAIEEVRRIAHNMSPVSLRRFGLPSALQTLIEHINASGKM
LGDLQILGLDRRLPEQTELTIYRICQELVQNTLKHAQASRLHLQLINHGDSLNITAEDNG
TGMDQGKVSSGFGLLGIEAKVQMLHGTFDIESQPGKGFLAVIDIPLTRIIQ