Protein Info for Echvi_1972 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1201 transmembrane" amino acids 42 to 63 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 163 to 1201 (1039 residues), 516.5 bits, see alignment E=1.8e-158 PF13620: CarboxypepD_reg" amino acids 164 to 226 (63 residues), 34.1 bits, see alignment 5.7e-12 PF13715: CarbopepD_reg_2" amino acids 164 to 247 (84 residues), 55.4 bits, see alignment 1e-18 PF07715: Plug" amino acids 257 to 359 (103 residues), 43 bits, see alignment E=1.2e-14 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 335 to 365 (31 residues), 57.8 bits, see alignment (E = 6.9e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZP3 at UniProt or InterPro

Protein Sequence (1201 amino acids)

>Echvi_1972 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKTLLLHAEKGGCGSLYSLSTLSYLHRIQFLASSFGRKVMLIMKWSVFIIGMICYTSSA
LIAEEVKGQSLLESKVTIQLKEQTLKSALDQISKASGISFVYSGKLARSKATVSLTAEGI
PLRKVLDDILKGLPFSYQSLGSEILFQYDPDQIKESNTLLEKEIKGKILTSNGLPIVGAS
IQIKGTHKGTFTDKEGAFTLTGVQEDDVLVISMIGFERKEIESSDVGGESLSISLKESIG
EMEAFTVSTGYESIPEERATGSFEHVDNQLLNRQVSTDVIGRLKAIAPSILFDERDGETR
LTIRGRSTIFGDDSPLIILDNFPYEGDLDNINPNDIESISVLKDAAAASIWGVRAGNGVI
VITTKQGKNNLPPSLEFNSNLTIGEKPDLFYRPQMSSSDFIDVETFLFEKGYYDADLTNS
ETYPMITPVVEILEKGRQGEISPEEAVRSIDNLRDVDIRNDYLKHFYRPSTKQQYALNLK
GGNENYRYFFSAGYDKNLLEEKGNDYERISLRSSQTFTPFKDFDITGSITYTRSMRNDNN
TLNDARQNIEYPYAKLADSEGLPLSVLRDYRSSFIKNSLQEGFLNWSYYPLDEINLTSKK
SSLENIRASTSVAWKITKHFKIKGQYLFENQGVVNETLRGQDSYYVRNLVNNFSEPTGDG
VNRNLPLGDILYFSQNSILSHNGRFQGEYNYFEGDHFITALAGVEARQVDGAGYGNVYYG
YDRQLGTSANIDHVGYYRLYPSGNYTNISDETTIQGTSDRFRSYFSNIAYTYKDRYTFSA
SGRIDQSNLFGVNSNQRSVPLWSVGSKWDVNKEGFYNLDWLSQLTLRATYGYSGNIDNSV
TAYTTANFTTATYTFRQSAFIVNPPNPNLRWEKSGMLNLGLDFKALEGRIWGSFEYFKRN
ATDIIGQAPLNPTVGLLSYRGNVADMSGKGWDLVLNSTNINSRINWQTQFQLSHATDKVT
NYEVKATTISNLFTDASISRAPVYVQPIEGRPLFGIYSYPWAGLNPETGAPQGYLNGKVS
TDYSSIFLLENTPIEDLVYHGPAMPTLFGALRNTFEYRGWAFSFNIACRFGYYFRRSSIN
YSSLFQNRTGHKDYATRWKEPGDEMHTNVPSLIYPASTNRDLFYGRSEVLVEKGDHIRLQ
DINLSYHFKELPSRWKIQGAKIYIYANNLGLLWTANEHGIDPDFPQIPLPRTISFGINAS
F