Protein Info for Echvi_1967 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 165 to 179 (15 residues), see Phobius details amino acids 304 to 316 (13 residues), see Phobius details PF00392: GntR" amino acids 19 to 80 (62 residues), 35.3 bits, see alignment E=7.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZN9 at UniProt or InterPro

Protein Sequence (448 amino acids)

>Echvi_1967 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs (Echinicola vietnamensis KMM 6221, DSM 17526)
MVPEFFQHLELHRNRAFALQIEEFIIDLIQKEVLKENFPLPSSRKLAFYLSVHRKTVIKA
YDRLTAKGYVYTIERVGFYVNRSRPAPRGFKPYESKINLSEDYPDISLSPISELGRAYRR
YFWKARNYDHHLVQSTGYPPFRDTMHTYLVHNRGINCTYEEFCVFYGYYTLLLMTVFSFL
RKEGAIVMEEPADPNIRNVLRSMGLKFITVRVGHQGINTTELEAICQKHQIGALILSPRN
QYPTTAVLSFGRREKVVWLSRKYGFTIIEKDFEHEFIYNKEVPGTLKGEFPNDNIIYISP
LSKMIPSLHLTVLLIAPRHFIYSIRKLLYSQRNVILEQSLNELIREGVINLFSKKLNKIY
KKRRDHIHQFLKRQSGIFHHPPQTGLAFWIEFSRPLAIEQVRNRLKKEGYYLQNPAHYFA
GEHPNNAIRIGFGKSLPEHFEKIWGIFR