Protein Info for Echvi_1919 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: FOG: PKD repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1645 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF19406: PKD_5" amino acids 736 to 807 (72 residues), 22.5 bits, see alignment (E = 2.7e-08) amino acids 818 to 901 (84 residues), 45.3 bits, see alignment 2e-15 amino acids 916 to 999 (84 residues), 20.6 bits, see alignment 9.9e-08 PF13573: SprB" amino acids 1009 to 1038 (30 residues), 34.8 bits, see alignment (E = 3.2e-12) amino acids 1086 to 1117 (32 residues), 23.1 bits, see alignment (E = 1.4e-08) amino acids 1169 to 1199 (31 residues), 33.1 bits, see alignment (E = 1.1e-11) amino acids 1325 to 1354 (30 residues), 25.1 bits, see alignment (E = 3.3e-09) PF18911: PKD_4" amino acids 1486 to 1547 (62 residues), 66.9 bits, see alignment (E = 4e-22) PF00801: PKD" amino acids 1491 to 1541 (51 residues), 51.1 bits, see alignment (E = 3e-17) TIGR04131: gliding motility-associated C-terminal domain" amino acids 1558 to 1642 (85 residues), 42.7 bits, see alignment 2.5e-15 PF13585: CHU_C" amino acids 1558 to 1630 (73 residues), 49.5 bits, see alignment (E = 1.2e-16)

Best Hits

Predicted SEED Role

"internalin, putative" in subsystem Listeria surface proteins: Internalin-like proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FW95 at UniProt or InterPro

Protein Sequence (1645 amino acids)

>Echvi_1919 FOG: PKD repeat (Echinicola vietnamensis KMM 6221, DSM 17526)
MDNAKRYPFLQFLIFFASLSLATAASYALVEKWSPTLAHENLVPDADFEFDTSISCSRAA
IAFTDLSSGDSLTYEWNFGDPNAGELNTSFEQHPIHEFVGTPGTSTETFAVSLTVTEPDG
TQSTVTKDITLNQAPSLEVGTEQDGVNFDDLQYVIICENDDSEFVFYNQSTTQETNVSYT
LDWGDGSEKFTGTDWTELSHSYSMGVYRLIYSVTGPTGCTATEEYGIFVGSNPAVGLGNP
GNTNVCGGQTLTFPITGTENNPTGTIYTVDYSDGSPPETYNHPPPASVTHTFDESSCGVN
SGNFPNSYSVSITASNPCSASSAVVSPIYVSEIPDPEFDAPEEPVCVDTPIPIQNLTEFG
GEVTTNGECEDLGIFVWQISPETGWELSSGTLGNQLNPSAPNSWSNGSEIIRPVFSEAGT
YTVRLITGNRCGINEEVKTICVNETPEPAFELSTTSGCGPLAVSVTNTSFVDTSCGENAV
YNWSIQYQSAFCGSGANWEFSEGTNQNSVSPAFNFLGSGRYTLNLSMETNCGTFYASEEV
EVYAPPLVELSPISSICEPTTITPSATVEICDIGEATYQWTFVGGSPSSSTTLDPGEVLF
DTPGEKTIILSVSSACGVSEDSVSFFYNVPPVAEAGDNSTICLGETVALAAAGPSEDNLS
VQWSSPNNTSIADANSPLAIASPIETTVFSLRVTDTETGCFSTDEVTVTVEPAPVITFSQ
PDQVICSGETSTAVTLSSAPGTTLEWTADFGPVTGGLSNGTTEIPAQTLINLSSAPVDVT
FTGIITDSDQGACAVQPATYTITVQPELNYPDAALEICNGETFNFLPENHISGAGYQWSV
LDPGPLAGTNDQATASASISQTLINPGNSSAAATYEITPVLEGCQGDPFVLQVTVIPSSN
LSISSVSQEICSGSASEEVTLSNNIPDADFSWTATANGAVGVITAGDTPTIPAMELTNPT
DAPIQVIFTGTSSAMSQGDCAGNTVSHTVTVYPAITIQEDMTDYSGYAISCFGANDGRIA
VVPTGGNGQYQYAWSGPDGFTATDAVIENLAVGTYELTVQDGAGCEATSSYTLTSPAPVQ
VNLVETTAVYCAGEATGAISMEATGGNPNIPFTYSWQKDGQAFGQTGAEINNLPAGEYTL
TVFNGDNCATTSQSITITEPDSPLLIAYEKEDISCYGANDGTLALDIQGGVPPYTVSWDF
GSSQLAFTDLGPDVYTVTVADQAGCIKTENITIEDAPLFQVTPSVSQITCTGANDGSKQL
DLQQNNLDYTIRWDHGPELENIFNLSPGSYGVTIEQADGCSIRQEFNLLEPAPLVIESQV
VDALDCDNPQSGSLSIGISGGTPPYAITWSNGATTPELSGLTAGQYQVSVTDNAGCNVVK
QMEVKRPAPIEVISTRNTTVACEANQVTEEIALSISGGTPPYSINWSGGEITNNGLNMTT
TASGLFTAEITDGSGCLVSESFSVENPPTVVNAAVSSEAFATHNAHLAHFEVAFQNLSTG
SITHYFWDFGDGTTSTEEHPRHTYKSAGTYQATLVVTDAFGCTSETVLRVEVTDHAIMVP
NVFSPNDDGLNDHFFPKFRLISTLEFWVFNKWGEVIYHTEDLNAAGWDGTVNGTPADAGN
YVYKLNYTTMDGRSDTMTDVFMLLK