Protein Info for Echvi_1906 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1203 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 79 to 102 (24 residues), see Phobius details amino acids 114 to 132 (19 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details PF09990: DUF2231" amino acids 46 to 170 (125 residues), 30.9 bits, see alignment E=1.1e-10 PF13442: Cytochrome_CBB3" amino acids 220 to 288 (69 residues), 35.9 bits, see alignment 3.1e-12 PF07635: PSCyt1" amino acids 225 to 272 (48 residues), 32.7 bits, see alignment (E = 3.6e-11) PF07626: PSD3" amino acids 308 to 373 (66 residues), 72.8 bits, see alignment 1e-23 PF07637: PSD5" amino acids 797 to 857 (61 residues), 70.5 bits, see alignment 4.8e-23 PF07631: PSD4" amino acids 870 to 993 (124 residues), 136 bits, see alignment E=4.5e-43 PF07627: PSCyt3" amino acids 1012 to 1109 (98 residues), 100.7 bits, see alignment E=1.8e-32 PF07624: PSD2" amino acids 1125 to 1199 (75 residues), 73.4 bits, see alignment 4.1e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZI0 at UniProt or InterPro

Protein Sequence (1203 amino acids)

>Echvi_1906 Predicted membrane protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRIIHKAISGGLPVVGGLILSLIMVAIAVIPIPAAHWSLAFLGKLHPLLVHLPIGVFLA
LVFLEFANQFVPGKPLAPACIVLLWLTVVTAIPTVVVGALLAGTGGYGSDTLVLHKWLGV
ATALASIWLLVYRGRQSSAANGHISYFSALAVTTILLGATGHYGGTLTHGTGFLTEDLPD
DIKAFLGDDPYALDGLAMMERGEIDETLSQLEYARDIDPITASYCESCHGEKEQKGGLRL
DNIDPDMVKGHDAETWRAMLNMVNSGEMPPKEEKQLSDEERRKLVDWITASIQRAVALRK
ADQEPVIRRLTKDQYTNTLADLLKVDVNFGEVLPDDAKSEMGFSNNGQVLGVSPLQVDYY
KKIAREALDKAIAPAKKPATTRYRITFGKGIGKGKTAAMIGGYQSAPINSADFVVEVLDD
QGNPKRPKDSAAMAQLEEVKRNIGVGMRGSHADRYQVVDEGIMLYSAVPHKEVTPKSWQG
PSPNLKLLFRRHFPEEGDFVFRVKASRGYQWEAQKEGLIGLRNDQPAEKLETTILLLPKA
GKDLQNMSMQGPWMKPKELTEHASVTFYFTAPRDGYYQVDFEHPYVGAEGMPSAELQIDE
HKLQERFHFDEKMKDDASMMTPLTLAYLKAGEHKLMIGGKFFTGFSKVIVTPFPEDHPVA
MQLQNEAEKSRAKYDQDVPVIRTFAGERTDDGMDYQTFDTFQNVSNETGKWKHYTFKGRL
ENLPIPVIDTVETEILANIMILGLWNDYLVKDNEDSGPPLLINQLEFEAPYYPQWPPASH
EAIFFDSPAKNDQKAYTKEVLSSFLTRAYRRPVEQEEVATYMEFWESIRPDYARYEDGIK
EVLIAALCSPNFLYLAEPKKETSEEEKEFFLASRLSYFLWNEAPDEELLELAKEEDLHKD
RYLKRQVDRMIEDERIWHMVRRFSNEWLRIDRHEAMSTNVNAYPDFTRFVKKDMTEETYH
FMHYILQQDLSIMNMIESDFAMLNQNLAEFYGITGVKGNHFRPVAVTPDMHRGGLLSQGA
FLNGHSDGNQAHAIKRAVWVRGKILGDEPPPPPPNVPQLDPETPGFEKLTLKEQLFVHRD
KPACMDCHKKIDPYGIAFENYNAVGRFETVASTGSKIDAKSELPNGEVVNGIDEIKSYIL
NMKQDTFTRSLVKHLFSYAMGRDVTFVDEREIEKIVSEVREANYSFRSVVENIVLSDSFK
GQF