Protein Info for Echvi_1878 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Beta-xylosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 109 to 363 (255 residues), 99.5 bits, see alignment E=1.2e-32

Best Hits

Swiss-Prot: 56% identical to XYLB_BACOV: Xylosidase/arabinosidase (xsa) from Bacteroides ovatus

KEGG orthology group: None (inferred from 60% identity to psn:Pedsa_2706)

Predicted SEED Role

"Xylosidase/arabinosidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYL8 at UniProt or InterPro

Protein Sequence (374 amino acids)

>Echvi_1878 Beta-xylosidase (Echinicola vietnamensis KMM 6221, DSM 17526)
MKKSLKRFLFTFAMGATMLSFSQCGSKTSTESTTEADSFTHKDTISYLSQPLITDHFTAD
PSAHVFEDKIYIYPSHDIPSSAQEDDTGAQYDMKDYHVYSMDSPNGKVTDHGEVLHVADV
AWATKQMWAPDAAEKNGKYYLYFPAKDKENIFRLGVAVSDDPAGPFEPQPAPMNGSFSID
PAVFEDRDGTHYIYWGGIWGGQLQKWRTGKYHSTGDSPFADEPADEEPAIAPKVAKLSGD
MLEFGEKPKDILILDQAGEPIKAGDHDRRFFEAAWVHRHDDTYYFSYSTGDTHTISYATG
DNPYGPFTYQGVVLAPVQGWTNHHSIVKVGDQWYIFYHDTQISGKNYLRNIKMAPLQHNP
DGSIQTIIPMEKTK