Protein Info for Echvi_1874 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: AraC-type DNA-binding domain-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF02311: AraC_binding" amino acids 26 to 106 (81 residues), 22 bits, see alignment E=2.8e-08 PF07883: Cupin_2" amino acids 27 to 79 (53 residues), 37.5 bits, see alignment E=3.9e-13 PF12833: HTH_18" amino acids 197 to 274 (78 residues), 67.3 bits, see alignment E=3e-22 PF00165: HTH_AraC" amino acids 242 to 273 (32 residues), 28.6 bits, see alignment 3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FW60 at UniProt or InterPro

Protein Sequence (279 amino acids)

>Echvi_1874 AraC-type DNA-binding domain-containing proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MKPIVQKLPRQEFKSFVSITMSTPIFETPWHRHIENEILYIQEGHGTAIIGDFVGEFSPG
DLFYIGSNVPHWFRKAQKDIFCTVVVIQFDQAIFGQTFLKLPEMAKVRQLIRLKQGMAVG
YAGQEEIIGSIKRLVEVEGFPHISTLLDILHQISSHTQNSLLTHEPIDSFDSKGIIDEVL
EYTFEHFQENIRVEEVAAIAKMSTSNFRRFFKLNTKKSFSGFLKEIRIAHACKLLKDKNT
FISQIFHQCGFRNITNFNRQFKEIKGVTPTAYRAAIYRS