Protein Info for Echvi_1871 in Echinicola vietnamensis KMM 6221, DSM 17526

Updated annotation (from data): transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside
Rationale: Important for utilizing glucose, galactose, xylose, and methyl-b-D-galactopyranoside, but not in most other carbon source experiments
Original annotation: transporter, SSS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 82 to 102 (21 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 292 to 316 (25 residues), see Phobius details amino acids 357 to 381 (25 residues), see Phobius details amino acids 402 to 421 (20 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details amino acids 459 to 477 (19 residues), see Phobius details amino acids 483 to 504 (22 residues), see Phobius details amino acids 528 to 546 (19 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 39 to 465 (427 residues), 359.8 bits, see alignment E=1.1e-111 PF00474: SSF" amino acids 39 to 464 (426 residues), 233 bits, see alignment E=3e-73

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 58% identity to hhy:Halhy_6397)

Predicted SEED Role

"Predicted sodium-dependent galactose transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZF3 at UniProt or InterPro

Protein Sequence (547 amino acids)

>Echvi_1871 transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside (Echinicola vietnamensis KMM 6221, DSM 17526)
MTFNTLDLVVFVAYCLLIITMGIVVSREKKGHVKDSKDYFLASKALPWWAVGASLIASNI
SAEQFIGMSGSGFALGLAISTYEWMAAATLLVVAIFFLPIYLKEGIYTMPQFLNRRYDGR
VRTVMAIFWLLIYVFVNLTSVLYLGALSLETIMGVPLTYGIIGLALFAMVYSIYGGLKAV
AWTDVVQVVFLVAGGLATTYLALSLVGDGDVWEGIGILRKAAPSHFSMIIEKGEMMIPDG
SGGSRDAYLDLPGLSVLIGGMWIVNLNYWGCNQYITQRALAAKSLGEAQTGMVFAGFLKL
LMPLIVVIPGIAAYVIVQKGADASFIESMTDPVTGLAKSDRAYPTLLHLLPPGLKGLAFA
ALTAAIVSSLASMANSTSTIFTIDIYKEFFNKNVSEGKQVTIGRITAVVAFIIAAIVAPQ
LRQLDQAFQYIQEYTGFVSPGVFAIFIFGFFWKKTTSNAALTAAVLTIPLSAAFKVITPN
LPFIDRMGVVFLVLSVLIIAISLYEGKGKDSKKAIEVDAELFSTSTKFKVGAVLICGILV
ALYSVFW