Protein Info for Echvi_1870 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 972 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF15979: Glyco_hydro_115" amino acids 193 to 535 (343 residues), 440.6 bits, see alignment E=4.8e-136 PF17829: GH115_C" amino acids 799 to 956 (158 residues), 95.6 bits, see alignment E=3.2e-31

Best Hits

Predicted SEED Role

"FIG00620252: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZS5 at UniProt or InterPro

Protein Sequence (972 amino acids)

>Echvi_1870 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MNLKNYAFCFLVFSCLFLVNQSVFARQSTGTVSGIEVEGFFPLVGDEAATLVVDVSAEKS
LLTAVENFQHDVQTVTGKAPEIVKRAALKDQSRVVLIGTVGESPLLEALEQSGKLDFSAV
RGRWEVFHRQVIQRPFPGVEEALVIAGSDPRGTVFGVYDLSEQIGVSPWTWWADVPVKRQ
ETLYVAPAPLTSEEPSVKYRGIFLNDEDWGLQPWAAKTFEPETGDIGPKTYAKIFELLLR
LKANFIWPAMHPSTKAFFHYPGNAEMAKNYGIVIGTSHAEPMLRNNVDEWHHDSFGDFNY
TTNRERVYDYWDERVAESKDIAAVYTVGMRGVHDSGMEGAGSTEEAANMLENIIQDQRGM
LEKHKGGDAADVPQAFTAYKEVLGIYDAGMDLPADITLVWPDDNYGYIRRLSDASERKRV
GGAGVYYHASYWGRPHDYLWLSSTHPALIREEMMKAYQLEAKNIWVLNVGDIKPSEYNIQ
LFLDMAYDAPAFKQPEHVQEHMKEWYRGIFGAHGAAIGKAMWRYYQLAFERKPEFMGWSQ
TEPTTPIHESAYSPFLAGDEVDKRLQAYQDLVSALEQIKPGIEAEQFSAFYQLAYYPIKG
ASLMNQKFLYRQKALDYQQEGRLSAADYAKKVHEAYDDIVKETAFYNQQLADGKWNHMMD
HAPRRLPVYQEPEMAMEELSAGIPSVQVSMERGGIAEGKLPVFNNLTKREHFFDLYLSGE
KTASWEVVAKPDYILLDHSSGVLSPSGQKEERIWVKVDWANVPFSTAPLNEEISIQVDGK
TITVPVELTNFQGVGSDLFVADNGQVVIYAENHSQRKANGKQNWERVDGLGHSGAVMQAA
GLKLPSVEKDFGRQASLTYEFYLDKAVEEASVAIMALPTHPVTDENGVKVGVSVNGGPIQ
LLDFQTHGRSEEWKQNVLRNRAVKTAKEISLKNGRNTLEVFWVDPGVLLDVIKIKVHPEL
EEGYGLLPETKP