Protein Info for Echvi_1858 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1036 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 26 to 1036 (1011 residues), 925.6 bits, see alignment E=4.9e-282 PF13620: CarboxypepD_reg" amino acids 27 to 96 (70 residues), 38 bits, see alignment 3.5e-13 PF13715: CarbopepD_reg_2" amino acids 27 to 108 (82 residues), 72 bits, see alignment E=6.8e-24 PF07715: Plug" amino acids 117 to 223 (107 residues), 66.9 bits, see alignment E=4.2e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 199 to 229 (31 residues), 58 bits, see alignment (E = 6e-20) PF00593: TonB_dep_Rec" amino acids 460 to 793 (334 residues), 66.5 bits, see alignment E=8.6e-22

Best Hits

KEGG orthology group: None (inferred from 57% identity to fjo:Fjoh_1560)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYK4 at UniProt or InterPro

Protein Sequence (1036 amino acids)

>Echvi_1858 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MERRITIFFISCLLLLPMLSYAQNNEITGNVTLKSNGEPLPGVAVMIEGSGTGTITDVDG
KYSIQAPSGSTLVFSLLGMKPQKVTISNQTNLNVQLEENLSALEEVVVVGYGVQKKSVVT
GAISSVKASDLESMPINRVEQALQGRTSGLTIASSSGQPGSGATVRVRGLTTFGNNDPLW
VVDGVVVDNGGIGYLNQSDIESIEVLKDAASQAIYGARAAAGVILVTTKKGEAGKIRVNY
NGYYGTSAPAKKLDLLDASQYAMIRNEAATNAGNTAPFSNPASYGAGTDWQDLIFNNSAQ
RQNHELSISGGNEKSTFYTSFGYLDQEGIVASEISKYKRINFRLNSEHQLASWLKVGQNL
GYAHDKSIGLGNTNSEFGGPLSSAINLDPMTPAIISDPNIAGQPPYSTNPVIRDAMGRPY
GISTIVAQEMTNPLAYTQTRLGNYSWSDNFVGNVYAEAEPIKGLKLRSTLGAKLSYWGSE
SFTPIFYLNATTVSNQTNFTRNQNRRFDWNLENTISYSKAIDQHNFTVLLGQGAYLDNRG
RSATVTFFNVPANNFEDASLNFKVPNDQRNADGSEGAGHTVSSLFARANYNYTEKYLLEA
LVRRDGSSRFGPNNRYGIFPSFSAGWVITQEAFWPTNPVVDFLKVRGGYGIVGNDNIGDF
AFLSTIGSGRNYTIGNTGSYVIGYSPNAPSNPDLKWEETSQANIGFEATLFGDFNITFDW
YKKVTKGILQNPRIPGYVGAISNPAANVADMENRGVELELGYRKMLGELELSLNGNISYL
ENEVTNLGTDISYLSGGQSFQASSYPITRTAVGQSMNSFYGFQTQGIFQTIEDVENYTNT
DGEMIQPNAQPGDFIWADLNKDGQITEADRTFIGNPTPTWSYGFTANFQWNNFDLVFFGQ
GVAGNKIFQGLRRLDISNANWQTEVLNRWTGPGTSNDYPRIVEGDPNKNFNNPSDFYLED
GDYFRIKTLQLGYTLPKNLISKVAMNRARVYVMSENLATFTKYSGYDPEIGGGVMSIDRG
IYPQARSYMLGVQIGF