Protein Info for Echvi_1841 in Echinicola vietnamensis KMM 6221, DSM 17526
Updated annotation (from data): predicted cytochrome c component of periplasmic glycoside 3-dehydrogenase (EC 1.1.99.13)
Rationale: Important for utilizing various glucosides (salicin, trehalose, cellobiose, and perhaps lactose). In a conserved cluster with the 3-ketoglycoside pathway starting with lacAC.
Original annotation: Cytochrome c551/c552
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Cytochrome c551/c552" in subsystem Soluble cytochromes and functionally related electron carriers
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.1.99.13
Use Curated BLAST to search for 1.1.99.13
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0FZQ4 at UniProt or InterPro
Protein Sequence (141 amino acids)
>Echvi_1841 predicted cytochrome c component of periplasmic glycoside 3-dehydrogenase (EC 1.1.99.13) (Echinicola vietnamensis KMM 6221, DSM 17526) MNLSKLASAGAIALAGMAYACGGGSDTKSEETTSAAESAAPKKEMSFDEMYKDNPDYVEG LALVKESDCPSCHMVERKIVGPAYKDVAEKYESTDENIETLAKRVVDGNNGVWGQVPMPA HPGLSEDDAKKMVKYILMLKK