Protein Info for Echvi_1796 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ATPase components of ABC transporters with duplicated ATPase domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 636 PF00005: ABC_tran" amino acids 22 to 187 (166 residues), 104.2 bits, see alignment E=4.4e-33 amino acids 336 to 470 (135 residues), 91.3 bits, see alignment E=4.5e-29 PF12848: ABC_tran_Xtn" amino acids 226 to 299 (74 residues), 48.6 bits, see alignment E=3.5e-16 PF16326: ABC_tran_CTD" amino acids 564 to 630 (67 residues), 43.1 bits, see alignment E=2.1e-14

Best Hits

KEGG orthology group: None (inferred from 51% identity to sli:Slin_4406)

Predicted SEED Role

"COG0488: ATPase components of ABC transporters with duplicated ATPase domains" in subsystem Folate Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZL8 at UniProt or InterPro

Protein Sequence (636 amino acids)

>Echvi_1796 ATPase components of ABC transporters with duplicated ATPase domains (Echinicola vietnamensis KMM 6221, DSM 17526)
MDMNYLSVEKLSKSFGDKPLFHQISFGIDQGQKIALVGINGAGKSTLMKIIMGMEIPDEG
EVAINQGIKTAYVHQNPVFEANLTIYQTLFSDSSSEPLKAIEAYQKAMLAAESGKDNADE
LNGIMEKMDRLQAWDFEYQIKEVLGKLGLHDTDLPVGNLSGGQRKRVALAKAILEKPDLL
LLDEPTNHLDLKTIEWLEDYLSKANLSLFMVTHDRYFLEKVTNEILELDAGKIYRYTGNY
SYFLDKKAERREVEASEQEKAKSLYKKELEWIRRQPKARGTKAKYRVDAFEATKEKAFQR
KEEREVALQVSAKRLGGKIIELEKLFKRYGDKRIVSDFSYTFKKGDKIGIVGPNGAGKTT
FLNMLTGTLKPDSGDITIGQTTAFGYYRQEEHSFDESKRLIDLVKEVAEVVTLSNGSTIT
ASQFLNQFGFPPKQQHTPISKLSGGEKRRLQLLMVLIKTPNFLILDEPTNDLDIVTLNTL
EDFLEYFPGCMIIVSHDRYFMDRLVDHIFVFQGGGQIKDFPGNYSDLREWEKEEEAKAAA
DKSVTKTQPSVHEGASEKAKKSSKASFKQKQEFKAVQEKINQLELEKGSLIEKINEGTED
HELLLEWSTAIQGIDEQLEELEFRWLELSELDDIMD