Protein Info for Echvi_1787 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: C-terminal peptidase (prc)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR00225: C-terminal processing peptidase" amino acids 70 to 360 (291 residues), 275.4 bits, see alignment E=3.2e-86 PF17820: PDZ_6" amino acids 127 to 177 (51 residues), 29.9 bits, see alignment 3.8e-11 PF03572: Peptidase_S41" amino acids 206 to 360 (155 residues), 170.2 bits, see alignment E=2.9e-54

Best Hits

KEGG orthology group: K03797, carboxyl-terminal processing protease [EC: 3.4.21.102] (inferred from 50% identity to chu:CHU_0098)

Predicted SEED Role

"Putative carboxy-terminal processing protease (EC 3.4.21.102)" (EC 3.4.21.102)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.102

Use Curated BLAST to search for 3.4.21.102

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ95 at UniProt or InterPro

Protein Sequence (565 amino acids)

>Echvi_1787 C-terminal peptidase (prc) (Echinicola vietnamensis KMM 6221, DSM 17526)
MQTGKEQTVMMMKKRSSLIAIFLVLIVGGGVLVSFKGKNDKLFLIAKNLDIFASLIRELD
SYYVDEIKPEELVTVGINAMLEELDPYTTYIPEEESEDFRTMTTGEYGGVGAMIGNRLGK
NMILMPYKGFPAESSGLRIGDELLQIDTVNVVDLVTSEISEMLKGPANTPVEVMVKRGED
TLSFDIMRKKIVINNVPYYGMVNDHIGFIKLTDFTTNAGDDVRKALVELKEQGADRLILD
LRDNPGGILKEAVDIVSLFMPKGKEVVSTIGKLENVNAEYKTNRSPVDKHIPLAILVNER
SASASEIVSGALQDYDRAVLVGRKTFGKGLVQSTIPLSYNAQVKVTTAKYYIPSGRCIQE
IDYSKRGKDGRAVSVADSLRHEFKTTNGRTVWDGEGIMPDEEVDARTYAPITYSLVARSL
VFEFANEFYYEHDSISSPRTFEVDDALYDEFVSWLEGKEYDYVTRVEKTIEDLEEYAKEE
KYFEDIKGEIDSLKKSVSHNKEQDLVTFKEEIKEALEDEIISRYYYEGGVVEASLDQDKE
VAKAVEILSDEAHYHQMLQPAMAKK