Protein Info for Echvi_1695 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted Na+-dependent transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 31 to 48 (18 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 118 to 141 (24 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 332 to 355 (24 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details PF01758: SBF" amino acids 93 to 258 (166 residues), 104.3 bits, see alignment E=3.4e-34

Best Hits

KEGG orthology group: None (inferred from 69% identity to dfe:Dfer_2140)

Predicted SEED Role

"Sodium-dependent transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ97 at UniProt or InterPro

Protein Sequence (426 amino acids)

>Echvi_1695 Predicted Na+-dependent transporter (Echinicola vietnamensis KMM 6221, DSM 17526)
MQRTRKFLLFSSPVIFIVFGIALAMGFTDVWKISAVACSVVFSLGLGASKRFGGYQYTAW
IMTAVVAGMIYPTAFLQWGDVDLRNKWLILFVVQAVMFGMGIQMSLQDFSNLASTGKGVV
VGLLSQFSIMPLVGFMLTNLFDFDPEIAAGIILMGACSSGLASNVMVYLARANLVLSVTV
TAMATMLAPLMTPFWMKTLAGTLIDIKFLDMMFNIIKIVLVPIGAALLHDYLKKADKNTK
NRIYGVAVSCAGYLMLLPFGLWQFYASRLSPAALQSLELMNFFMGAVVFGVAYHLCTRQF
KKLDKLMPYISMFGIVYFTTVTTAAGRDNLLQVGMLLFLVAVIHNGLGYFFGYWLSRLLG
LDIPSARAMALEVGLQNGGMASGLAGSMGKLGTVGLAPAVFSPWMNITGSILANYWRKRP
ANERDN