Protein Info for Echvi_1690 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: L-rhamnose-proton symport protein (RhaT).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 55 (21 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details amino acids 216 to 237 (22 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 289 to 307 (19 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details PF06379: RhaT" amino acids 3 to 337 (335 residues), 175.7 bits, see alignment E=7.9e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ91 at UniProt or InterPro

Protein Sequence (344 amino acids)

>Echvi_1690 L-rhamnose-proton symport protein (RhaT). (Echinicola vietnamensis KMM 6221, DSM 17526)
MSVIGGVMFHAVGASFAALCYTPQKKVVSWSWQTYWLAQAFFCWFLLPIIGAWLTIPELM
KVLDEAPKDAMWKAFGLGMAYGVGGTAFGIAIRYIGFSLTYAISIGISCVVGTLLPPLVK
GELAAVLQQEGSGWIVTGMVLGVLGIALCGLAGRYKELDLAKLEIGAQSSFSVSKGLPLC
ILAGVLSALYGFSIDQGQPIADVAVKYGAGDFQSNVVYIFSNTGAFLVTLFYCLYLHRKQ
RTFREFTRKAKAPLTKNYLLAIMTGMMWYSQFFFYGLGHVRMGDYKFTSWAVHMIMLVMF
STVAGLAMKEWTHAKGKTVYALVLALAVLLAAVLALTVGNAIGA