Protein Info for Echvi_1685 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type sugar transport system, periplasmic component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 PF01547: SBP_bac_1" amino acids 18 to 296 (279 residues), 40.3 bits, see alignment E=4.1e-14 PF13416: SBP_bac_8" amino acids 24 to 297 (274 residues), 27.6 bits, see alignment E=2.5e-10

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 52% identity to psn:Pedsa_0470)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ84 at UniProt or InterPro

Protein Sequence (387 amino acids)

>Echvi_1685 ABC-type sugar transport system, periplasmic component (Echinicola vietnamensis KMM 6221, DSM 17526)
MEKKILKGMTWGHSRGISPLQAFAQRFNQLYPDIEVQWRQRTLQEFADYPIEKLTETYDL
LIIDHPWVGCAAATNCVLALDEHLPEQFLANQAENHVGRSHQSYHYGGHQWALAIDAATP
VPSFRKDLLDQHAVAVPRRWEEVMALAKQGKVAAPAIPIDLLMNFYMFCQAHGREPFLST
EEVIDKSTGLKALETMKAFYSLLDRKLFDANPIRVAEYMSMGDDYWYCPFAYGYSNYARD
GYSDHLLTYGNLVDFAPGKKLRSTIGGTGLAVSAFSEHKKEALLFAQMIMSERYQATEYV
LNGGQPGHRKAWLSEQANAVTHHYFKSTLETLDASYMRPRYHGYLHFQDHAGDPIREYMM
GSGSPEAVLDRVNEIYQISQRTVAHES