Protein Info for Echvi_1680 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: transporter, SSS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 126 to 151 (26 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 275 to 299 (25 residues), see Phobius details amino acids 319 to 345 (27 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 432 to 450 (19 residues), see Phobius details amino acids 459 to 483 (25 residues), see Phobius details amino acids 509 to 525 (17 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 41 to 434 (394 residues), 271.9 bits, see alignment E=5.3e-85 PF00474: SSF" amino acids 42 to 434 (393 residues), 181.3 bits, see alignment E=1.5e-57

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 68% identity to bvu:BVU_2929)

Predicted SEED Role

"SSS sodium solute transporter superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ79 at UniProt or InterPro

Protein Sequence (528 amino acids)

>Echvi_1680 transporter, SSS family (Echinicola vietnamensis KMM 6221, DSM 17526)
MEIHEILQPLDFAVLGLYLVTLIGIGYWVSFKKKRDADENLFLAGNSLGWPSIGFTMWGT
NVGPSMLIASASIGYTTGVVAGNFAWYAFIFIFLLAVVFAPRYLGARVQTLPEFMGKRFG
SSTQNILAWYTIVTVLISWLSLTLFAGGILIRQILDLPLWLSVVILILIAAFFTIAGGLK
AIAYTNVFQMVLLIVVSLALTLTGLYKVGGVGELIANTPGEYWNLLLPADDPNYPWVAIA
LGYPVMGVWFWCTDQSMVQSVLGAKNLKEGQLGANFTGWLKILDVALFIIPGIICYVLFP
DLDNPDEAYMTMVTKLFPVGMTGLVMAVLIAALVSTIDSALNALSTVFTMDIYVKKYKPE
ATQKQIVTIGRVVTVLGAVIAIFLTLAIDSIKGLNLFDVFQSILGFIAPPMSVVFLFGVL
WKKTTTKAANTVLLFGTILSLGIGVLYLWVFPNAEYAFWPHFLLLSFYIFVFLAALIVVI
SYVERNRKDLHVSTLDYGTIPKLPNKVKWLWIALIVVMVGMYVVFNGN