Protein Info for Echvi_1630 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Lysophospholipase L1 and related esterases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00657: Lipase_GDSL" amino acids 31 to 238 (208 residues), 46.3 bits, see alignment E=5.7e-16 amino acids 267 to 469 (203 residues), 36.3 bits, see alignment E=6.6e-13 PF13472: Lipase_GDSL_2" amino acids 33 to 238 (206 residues), 52.4 bits, see alignment E=9.8e-18 amino acids 269 to 453 (185 residues), 52 bits, see alignment E=1.2e-17

Best Hits

Predicted SEED Role

"rhamnogalacturonan acetylesterase" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FZ19 at UniProt or InterPro

Protein Sequence (500 amino acids)

>Echvi_1630 Lysophospholipase L1 and related esterases (Echinicola vietnamensis KMM 6221, DSM 17526)
MKNLKYGLSAGIILWTLLMAFTPKAEKHTLYIIGDSTVRNSRGDGGPGQWGWGTFIDDFF
DSSQLAVSNQAMAGRSTRTFVKEGRWQRVLDALQPGDFVMMQFGHNEGSKPDTTRAGYRG
VLPGTGEETVDLTWPDGTAETVHTYGWYLKKFVTEAKAKGATPIICSMIPRNKFQDGEVE
RADQDYGKWAKEIARKTGAHFVDLNSIVADQYDQWGPQVVPSLFEKDHTHTNEAGARINA
WSVVQGIKALEDCSLKAYLSKDKPTLYLIGDSTVKNGQGDGAGGLWGWGDYMAPYFDLDR
IKVQNHALGGTSSRTYQTYGLWEKVREQLEPGDYVIMQFGHNDSSPLDDSHRARGTIRSA
DTAAEEIYNPITEQYETVYSYGQYLKQMITATKAAGATPIVCSLIPRNNWKDGKVNRAND
SYGLWAKQAAEAREACFIDLNNIIADGYDELGEDYVRAHFFNDTDHTHTILDGAKYNAKA
VVQGIQGLEDCDLKGYLVED