Protein Info for Echvi_1623 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyl hydrolases family 43.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 115 to 205 (91 residues), 38.3 bits, see alignment E=5.2e-14

Best Hits

KEGG orthology group: None (inferred from 58% identity to shg:Sph21_0474)

Predicted SEED Role

"FIG01092527: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXV7 at UniProt or InterPro

Protein Sequence (357 amino acids)

>Echvi_1623 Glycosyl hydrolases family 43. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKRRDFLGYTAMLPAMAMFPSSLEPLLRGDPVSAFAKRLEPMHRLLETEGYYVWGTSPIY
DQAGKVHVFYSRWKSEFGMGGWIHQSEIAHAVADRPEGPYTFQEVVLSPRGGDHWDATTC
HNPHIKAVNGKFYLFYMGNHNKRTNTKRIGLAMADSLDGPWKRPDKPLLEAGEEGSWDDH
CTTNPSFVQHPDGRCFLYYKSWNTYEYEHYTDPKIRGNRKYGLAIADQPEGPYRKYDGNP
IINYADKGDNIQAEDGFVWFQEGKFRMLMRDMGIYNHQYGLYLESEDGIHFSDPPEIAYY
ETDHYFSQPPKPGHLSKYGRFERPQLLFKDDQPDYLFLTSQGGAFMTSSTYLFKIKD