Protein Info for Echvi_1614 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 PF00392: GntR" amino acids 20 to 83 (64 residues), 46.6 bits, see alignment E=3.3e-16 PF14502: HTH_41" amino acids 38 to 74 (37 residues), 26.7 bits, see alignment 4.5e-10 PF13377: Peripla_BP_3" amino acids 234 to 333 (100 residues), 31.5 bits, see alignment E=2.7e-11

Best Hits

KEGG orthology group: None (inferred from 54% identity to zpr:ZPR_1548)

Predicted SEED Role

"Transcriptional regulator of rhamnose utilization, GntR family" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FVF2 at UniProt or InterPro

Protein Sequence (351 amino acids)

>Echvi_1614 Transcriptional regulators (Echinicola vietnamensis KMM 6221, DSM 17526)
MTLVAEGLLLQIDSKSRIPKYQQIVDSIIKNIENGYLKVGEKLPSINDISEEYYLSRDTV
VRAYNLLREKKIITSVVSKGFYVNKAVNSSNSRILFILNKLSNYKLEIYNTFVNSMGSDN
QVDLRVYHCDPQLLINILEENMGAYDNFVIMPHFKDQKSGHTNYDKEVISCLKKIPKGRL
VIMDNYLPEMGDNIACIYQDFKMDIYRALEEAKDQLKKYDKLILAFPNNPIYPYPKEIKQ
GFLNFCNTYHFDAEVLDKIYPDMELQKKDAYIVIDENDLVSLVKQTRDMKYQIGKDIGVV
SYNDTPLKELFDITVISTDFELMGESAAYMIKKHKQEVVPNIFSFIDRGSL