Protein Info for Echvi_1610 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Zinc carboxypeptidase.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 854 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00246: Peptidase_M14" amino acids 61 to 299 (239 residues), 65.6 bits, see alignment E=2.9e-22

Best Hits

Predicted SEED Role

"Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYZ8 at UniProt or InterPro

Protein Sequence (854 amino acids)

>Echvi_1610 Zinc carboxypeptidase. (Echinicola vietnamensis KMM 6221, DSM 17526)
MLKRILSLILFLAAFHGLAQENVSLDYYLKPGYSYNPDIPTPASVLGYNIGEWHVSYDQV
HMYMKALAEASDRIKLEITGRTYEQRPLMMLTISHPDNLNKLNALKFQRSQLRNPAESRE
VDIENMPAVVYMGYSVHGNEASGVNASLLAAYHFAAANEVEEDLKNIVIIMEPGINPDGI
NRFASWVNSNRSIHMNGDPNNRELNEAWPRGRTNHYWFDLNRDWLPVQHPESRSRITKIQ
EWKPNMVLDFHEMGTNSTFFFQPGIPSRNHPLTPTKNFELTEKIAQYHAKYLDEIGSLYF
TQESYDDFYYGKGSTYPDVQGQIGILFEQASSRGHLQESVNGPLSFAFTIRNQFTASLSS
FEAAIAMRNELNSYMRDFYIDAKSDADADTNKAYIFGVDNDNGRTFHLADMILQHQIKLY
SLKEDITVNGVDFKANKAYIVPLNQPQYRLVKGMFETRTTFQDSLFYDVSAWTLPMAFDM
EFMAVNSRIMNLANVEEVKKGLTMPQGNVAGAAGAYGYAFEWGEYYAPKAAYRLMDLGYN
LRVTHEPFEVSGDLQFSRGTILVDKGQSGASDQAFFEDLQAVARETGITVHAINTGYTGG
INMGSPSIDVLEKPEIALLVDSGVSSYEAGEIWHLMDQRLEIPITLLPLDMVSRADLNRY
NVIIMPNGSYHPLSNSATESLQRWVSDGGTIIARGRALNWLNDHKLGEFSFKSETEKDST
VQKSYANLSNDYGSKVTGGAIFNVKLDLTHPIGYGYKNEELYTFRDSNQFLLPSENPYAN
PLIYTDEPLASGYVYPFNLEQMKNTAMIRISAKGRGKIIGFVDDPNFRAFWFGTNKLFYN
SIFFGQTISGSSAR