Protein Info for Echvi_1565 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Trk-type K+ transport systems, membrane components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 77 to 94 (18 residues), see Phobius details amino acids 114 to 132 (19 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 203 to 227 (25 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 403 to 421 (19 residues), see Phobius details amino acids 432 to 451 (20 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details amino acids 497 to 518 (22 residues), see Phobius details amino acids 524 to 544 (21 residues), see Phobius details amino acids 555 to 574 (20 residues), see Phobius details PF02386: TrkH" amino acids 144 to 576 (433 residues), 192.3 bits, see alignment E=6.5e-61

Best Hits

KEGG orthology group: None (inferred from 47% identity to hhy:Halhy_6221)

Predicted SEED Role

"Potassium uptake protein, integral membrane component, KtrB" in subsystem Potassium homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYW0 at UniProt or InterPro

Protein Sequence (593 amino acids)

>Echvi_1565 Trk-type K+ transport systems, membrane components (Echinicola vietnamensis KMM 6221, DSM 17526)
MNVNKKLLKQIIEKVILVLSFTAFALVIYEEGFKKPFLTVTDSHLLLKVMLSSIWAGYLA
LYFLVKSKTGGFTKKRISELIAILLISGILLFIFTDYSVPGLDVITQATTDRFLVDLLVA
GVFLIELSKVSLGVNELQLNPPLIFILSFLVLILIGTVLLMLPNATHQPIHLVDALFTAT
SAVCVTGLIVLDTAKDFTLFGQLIIMLLFQLGGLGMMTFTSFFGFFFRGSFSIQNQLFLK
DFINEDDFGQIFSTLMKIILFTFLVEGVAAVLIFVSLDNDLFGGVGEMIFFSIFHSISGF
CNAGFSVLSNGLYEEGFRDNYTMQLVIAFSIIFGGIGFPVVLNYYGYLRHFVRGMYRKIA
YGESYRHLPRVVNIGTRLIVLTTGILILVGFVSYWMLEYDHTLAGLDTYGKVVTSFFGAV
TPRTAGFNTVDMTALSVPTVLIYLLLMWIGASPGSTGGGLKTSTFAVAILSAFSIAKGKD
RVEVFRREISSSTLRKAFTVTFLSFMIIGLAVFALTLFDRDLPLISVVFEAFSAFSTVGL
SLGITGSLSFGSKMVLIMTMFIGRVGILTLLIALSKGVKNQSYRYPEESVFIT