Protein Info for Echvi_1542 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Superfamily II DNA/RNA helicases, SNF2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 979 PF04851: ResIII" amino acids 520 to 675 (156 residues), 26.9 bits, see alignment E=6.5e-10 PF00176: SNF2-rel_dom" amino acids 524 to 803 (280 residues), 234.7 bits, see alignment E=1.9e-73 PF00271: Helicase_C" amino acids 814 to 924 (111 residues), 82.2 bits, see alignment E=4.8e-27

Best Hits

KEGG orthology group: None (inferred from 58% identity to mtt:Ftrac_2608)

Predicted SEED Role

"helicase/SNF2 family domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FWW8 at UniProt or InterPro

Protein Sequence (979 amino acids)

>Echvi_1542 Superfamily II DNA/RNA helicases, SNF2 family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKVSPDKSFEIIYSLFSHEYLGILFESFVIQHDDKGRLSFAYQNIATQNAKEFASGLDST
DYELIELMDSMQHDAIVKTFNTKKLKPKEFLRKVFDTNSETTANKEIRRMIEVRLEGIRA
KILERIIGKRLFEMGNDGNPIWKEINVMEEKASVLFHFRRNEDNTHYFPTLKHGGEKLDW
QYKGGYLLCEEPAWLVVNGCLYNFEKGVDGKKLKPFLNKKFIVIPKNVEQSYYEKFITQL
VASFDVYAKGFDIKVQRSNPEALLSLSDLPGGGGGTDLFGNVQAAEEEDKIVFDLRFQYG
DYSFRSEEKKSNNVQLEQQGDNYIFHKVIRDLEKEKSYGDYLKDLGLPVRTSRFSLGKSK
AFDWLNSNREALEDMGVKILQNQSAKGKKYFIGNASIKVDIKENIDWFDVDAIISFGSFE
VPFAQIRRLLVKGKSEFELPNGEIAVIPDSWFVNYSEIFSFLETGEKQDEKMMLKKHHIA
LAQELQKGNLINLTLSRKLEKLKDFSEMESYDLPDNFNGTLRPYQKAGYDWLRFLNEYHF
GGCLADDMGLGKTVQTLAMLAHEKKRTEGATSLLVMPTSLIYNWEVEARKFTPDLKVLVY
TGSQRIKDSSMFSKYDLVLTSYGITRLDVDILKDFFFNYIILDESQAIKNPNSIISKAVN
QLVCKHRLILTGTPVENGTMDLWSQMNFVNQGLLGTQSIFKKQFLQPIEKKNDMDKAAKL
HAMIKPFILRRLKTQVATDLPEKVVNVKYSNMTPEQEKAYEEVKGYYREKIVKEMSIPGM
NRQAFTLLRGLTQLRQIANHPRLTDTAYTGDSGKLEDIVHMLDSTAREGHKVLVFSQFVK
HLAIVKEYLDESGIAYSYLDGTTKDRQAQVKDFQENDQVKIFLISLKAGGVGLNLTKAEY
VFLLDPWWNPAVEAQAIDRAHRIGQENKVIIYKFITHNTVEEKIMALQERKMALADELIS
TEESFMKSLEKEDIEALLA