Protein Info for Echvi_1538 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 61 to 79 (19 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 144 to 172 (29 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details amino acids 229 to 254 (26 residues), see Phobius details amino acids 265 to 282 (18 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FXM0 at UniProt or InterPro

Protein Sequence (443 amino acids)

>Echvi_1538 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MALSLPYVLMDIPLLSPELSWMLVGERLANGHFLYVDIVDDIGPLSAYVYWLIDYVAGRS
WWMYKLLAASIILFQIYYVNRLFIRYKAFDNTSYIPALVMLVLFHFSFDLLTLSPALMGT
TFIILALGQLFSQTLLNEQNTESILLVGLYGGIAVCFHFPMIVFLPFLLVAGVTVSGFSF
NQLVLSLAGYFQPFVLCCIYFFWIGGLPEFITEFVLATRITSSYPHVTYIDLLTLLAAPL
LFAVIGYFVGTVTTSITVNQQKQKQLMLLYTIFAIFSIFIANRRTPYQMVIMLPGLTYFI
AQIFLYLTNRKQLNVLFYTFILIIPTAGYAWTIYKIQSNKTWNYTLDDTVQPQAEKIVIL
GDEISAYQHATLASPYLNYRLSKRVLTDYSNQENMMEVYLNFVEEKPTLIYDQEGLFEKI
TERIPALAKRYQKEQQGVYRLSE