Protein Info for Echvi_1501 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 82 to 104 (23 residues), see Phobius details amino acids 125 to 147 (23 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details PF12844: HTH_19" amino acids 9 to 65 (57 residues), 41.6 bits, see alignment E=2.7e-14 PF13443: HTH_26" amino acids 9 to 62 (54 residues), 24.7 bits, see alignment E=5.6e-09 PF13560: HTH_31" amino acids 9 to 62 (54 residues), 40 bits, see alignment E=9.9e-14 PF01381: HTH_3" amino acids 10 to 63 (54 residues), 58.6 bits, see alignment E=1.2e-19 PF09685: DUF4870" amino acids 81 to 202 (122 residues), 59.6 bits, see alignment E=7.1e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>Echvi_1501 Predicted transcriptional regulators (Echinicola vietnamensis KMM 6221, DSM 17526)
MEENSISSKLKELRSSKGISQELLAXEAGISLRTVQRIESGRSKPNGSTCQRLAEALGIS
PDAFIDPHLIENTDFLKKLSLSAMSFILFPLLGILVPSVLWVLYKDKVKGIDEVARPLIN
FQISWTILLILLPFLIFPLLFGLLAISLGMTGMPSDLFSIGYIEERVIWFFLYVYNAAII
VVNTFKIHEGKGPRYFPSVKFVRST