Protein Info for Echvi_1500 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein and related peptidoglycan-associated (lipo)proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 898 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00691: OmpA" amino acids 550 to 636 (87 residues), 55.6 bits, see alignment E=5.9e-19 amino acids 691 to 778 (88 residues), 65.6 bits, see alignment E=4.5e-22 PF05036: SPOR" amino acids 824 to 896 (73 residues), 23.9 bits, see alignment E=4.3e-09

Best Hits

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FYC8 at UniProt or InterPro

Protein Sequence (898 amino acids)

>Echvi_1500 Outer membrane protein and related peptidoglycan-associated (lipo)proteins (Echinicola vietnamensis KMM 6221, DSM 17526)
MVLSMNKIFKAAFVIIFALLVYEKSYGQQALLRYADKEYGLLHYQESAEAYERAFEKRGK
YRAAKGAALSHEKMNDYQSAFEWWEKVIGFEESVTEDYVHFAAAANYEGKLEEVLVALDT
LPDREGLDPLNLDSLQYWYQSKTDLALEPMEGVNSPTADFGLVEDGKGNRYFTSDRGGSG
NSKKSAIRFDLSGKMNEDFYEWTGRDFLKVYKADSTGGISSMEVPVPDSYHFADPFFLDG
GNTVFYTVTRKIKRQNGKKIRPDKRVNPEMDYGQPSDSYIDFYSELYFSHVDDEGKFTDY
QAVPWNDATGYSIITPFVDEEAGMLYFASDMPGGLGGYDIYRVSFDDDFNFGTPENLGEP
INSPEDERDPFLMDDTFYFSSNGHFGLGGFDLFSAGYRGGAFSGLKNLGVPYNSPRDDFS
FLLAEDGQTYLSSNRSGGAGLDDIYTMQARLMRFLAKVVDCDGALISDGFMAEMIKKDEQ
SALELDQKSAGELHGDLTPGADYSLKISKRGYFPVHDDLIKAEAENGLVERSYTLVPIPY
RRTVFVDLVYYDLDKAVIRGDAMPVLDKVAELMASQSYLDLQVRSHTDSRASNQYNEELS
SSRADAVAAYLEGKGISSERVHEAWYGEEELINDCGDGKPCPEWKHQLNRRSELVLMAFS
EEGKAYELPADLKDLCETPNLGVMMDVPIIYFDFDKHTLRPESISQLDRVALLMRERPTV
ELALAGHTDIRGSEQYNEGLSEHRAAVVRDYLISLGIEEDRISYKWYGKTRPVHDCAEQP
CTEAEHQLNRRTEIMLMLDGVNINDASSKPSSSGEMSSLPSASEGIYLISGVFSTEKNAE
DHLKELEKQGFVDGAYFLNAEDQLYYCYVTTFESYHAASKGLEAYKSKGLANAWVKKI